Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 2.2e-146 522.3 274 100.0
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 3.2e-105 385.6 274 77.0
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 7.2e-105 384.4 280 72.5
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 8.8e-103 377.5 274 74.8
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.2e-102 377.1 273 74.0
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 4.4e-102 375.2 276 74.3
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 4.4e-102 375.2 278 73.0
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.5e-102 374.4 276 72.8
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 7.5e-102 374.4 271 74.9
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.8e-102 374.0 277 74.0
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.2e-101 372.9 277 73.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 2.2e-101 372.9 278 71.6
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.8e-101 372.5 277 73.3
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 4.8e-101 371.7 278 74.1
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 4.8e-101 371.7 283 73.1
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.8e-101 371.7 278 71.2
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 8.3e-101 370.9 276 73.9
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 8.3e-101 370.9 275 74.5
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.8e-100 369.8 278 72.7
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.8e-100 369.8 278 72.7
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.4e-100 369.4 277 73.6
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 3.1e-100 369.0 275 71.6
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 7.0e-100 367.9 274 71.2
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.2e-99 367.1 283 71.4
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.6e-99 366.7 275 71.6
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 2.7e-99 365.9 275 72.7
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 5.9e-99 364.8 277 71.5
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 7.7e-99 364.4 279 71.7
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.0e-98 364.0 278 71.9
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.3e-98 363.6 275 72.0
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.7e-98 363.2 276 73.2
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.9e-98 362.5 276 73.6
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.9e-98 362.5 276 72.1
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.9e-98 362.5 275 70.5
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.0e-98 361.7 280 72.1
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 5.0e-98 361.7 277 71.8
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.5e-98 361.3 285 71.9
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 6.5e-98 361.3 285 71.9
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 6.5e-98 361.3 278 71.2
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.1e-97 360.5 276 73.2
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.1e-97 360.5 285 71.9
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.5e-97 360.1 263 73.8
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.5e-97 360.1 280 71.8
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 4.2e-97 358.6 279 72.0
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 4.2e-97 358.6 276 72.5
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 4.2e-97 358.6 278 71.9
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 5.5e-97 358.2 272 72.4
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 7.2e-97 357.8 277 71.5
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 7.2e-97 357.8 277 71.5
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.2e-96 357.1 279 71.3
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.2e-96 357.1 282 71.6
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.6e-96 356.7 270 70.0
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.1e-96 356.3 273 72.5
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 3.6e-96 355.5 278 72.3
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 3.6e-96 355.5 281 71.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 3.6e-96 355.5 275 70.9
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 4.7e-96 355.1 272 71.7
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 8.0e-96 354.4 277 72.2
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 8.0e-96 354.4 283 72.1
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-95 353.6 275 73.1
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.8e-95 353.2 279 72.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.3e-95 352.8 284 70.8
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 2.3e-95 352.8 275 72.4
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.0e-95 352.4 281 70.8
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 3.0e-95 352.4 280 70.7
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 4.0e-95 352.1 276 71.7
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 4.0e-95 352.1 275 72.7
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 4.0e-95 352.1 275 72.7
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 4.0e-95 352.1 275 72.7
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 4.0e-95 352.1 274 70.4
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 4.0e-95 352.1 276 70.3
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.8e-95 351.3 276 73.6
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 6.8e-95 351.3 273 70.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 8.8e-95 350.9 275 72.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 8.8e-95 350.9 278 69.8
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.2e-94 350.5 275 72.0
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.2e-94 350.5 275 72.0
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.5e-94 350.1 275 72.4
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.5e-94 350.1 273 72.5
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.5e-94 350.1 246 74.8
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 3.4e-94 349.0 276 69.9
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 9.8e-94 347.4 273 71.8
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 9.8e-94 347.4 281 69.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.7e-93 346.7 275 71.6
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.7e-93 346.7 275 71.6
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.2e-93 346.3 275 71.6
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.2e-93 346.3 275 71.6
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.2e-93 346.3 218 81.7
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 2.2e-93 346.3 282 70.2
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.2e-93 346.3 282 70.2
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.2e-93 346.3 282 69.9
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.2e-93 346.3 270 70.4
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 3.7e-93 345.5 272 73.5
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 6.3e-93 344.7 277 72.2
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 6.3e-93 344.7 275 70.5
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.1e-92 344.0 275 71.3
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.1e-92 344.0 273 70.0
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.1e-92 344.0 279 70.6
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 2.4e-92 342.8 284 67.6
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 7.0e-92 341.3 275 69.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 7.0e-92 341.3 274 70.1
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 7.0e-92 341.3 274 70.4
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 9.2e-92 340.9 282 68.1
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 9.2e-92 340.9 275 70.5
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.2e-91 340.5 272 70.6
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 2.0e-91 339.7 247 74.5
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 3.5e-91 339.0 271 70.1
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 3.5e-91 339.0 275 70.9
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 7.8e-91 337.8 219 79.0
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.3e-90 337.0 274 68.2
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.3e-90 336.3 273 70.0
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.9e-89 333.2 287 66.9
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 9.5e-89 330.9 277 69.7
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.1e-88 329.7 280 67.1
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.6e-88 328.9 198 84.8
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 4.7e-88 328.6 276 67.8
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 5.2e-87 325.1 191 85.3
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 9.5e-81 304.3 276 63.0
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 3.6e-80 302.4 224 68.8
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.1e-79 300.8 190 77.9
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 4.9e-77 292.0 226 66.8
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.5e-73 279.6 169 83.4
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.1e-72 274.6 242 66.9
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 2.6e-62 243.0 134 93.3
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 3.4e-62 242.7 160 79.4
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.7e-61 240.4 197 69.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 2.2e-61 240.0 159 72.3
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 1.1e-57 227.6 196 67.9
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 4.3e-57 225.7 201 65.7
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 5.6e-57 225.3 271 51.7
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 2.1e-56 223.4 164 68.3
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 4.5e-38 162.5 234 50.4
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.3e-37 161.0 96 83.3
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.7e-37 160.6 131 68.7
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 6.4e-37 158.7 230 44.3
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 6.4e-37 158.7 230 44.3
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.5e-35 152.9 154 61.7
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 7.6e-22 108.6 111 57.7
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.6e-22 108.6 80 76.2
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.9e-11 72.0 142 36.6
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 5.1e-10 69.3 179 29.1
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.4e-07 60.5 60 51.7


User provided reference genes

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