Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22801 Selenicereus undatus HOM05D001260 ORTHO05D004134 5.1e-166 587.8 324 100.0
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 1.3e-81 307.4 304 61.8
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 1.1e-75 287.7 325 56.6
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 5.6e-72 275.4 307 58.6
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 3.1e-70 269.6 298 55.7
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 6.8e-70 268.5 300 57.3
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 1.5e-69 267.3 304 58.2
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 2.6e-69 266.5 296 56.1
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 5.4e-67 258.8 295 56.9
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 7.1e-67 258.5 297 55.2
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 3.9e-65 252.7 297 55.6
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 5.1e-65 252.3 296 57.1
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 2.8e-63 246.5 293 54.3
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 1.1e-62 244.6 296 53.7
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 4.0e-62 242.7 296 55.1
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 8.9e-62 241.5 307 54.1
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 1.7e-60 237.3 271 59.4
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 4.9e-60 235.7 300 52.0
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.4e-59 234.2 294 51.7
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 1.4e-59 234.2 294 51.7
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 1.2e-58 231.1 295 51.9
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.2e-58 231.1 293 51.9
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 1.6e-58 230.7 297 51.5
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 2.1e-58 230.3 301 50.5
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 2.7e-58 229.9 316 49.7
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 3.5e-58 229.6 291 53.3
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 3.5e-58 229.6 293 51.5
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 7.8e-58 228.4 295 50.5
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 2.3e-57 226.9 298 50.7
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 3.0e-57 226.5 297 50.2
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 3.9e-57 226.1 300 51.3
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 6.6e-57 225.3 297 50.2
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 6.6e-57 225.3 300 51.3
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 8.7e-57 224.9 295 53.2
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.5e-56 224.2 295 53.6
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 1.5e-56 224.2 299 50.5
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 1.9e-56 223.8 295 51.5
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 4.3e-56 222.6 289 52.9
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 4.3e-56 222.6 280 52.5
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 4.3e-56 222.6 344 45.9
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 7.3e-56 221.9 289 52.9
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 7.3e-56 221.9 300 49.7
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 1.6e-55 220.7 292 51.7
Manes.07G121400 Manihot esculenta HOM05D001260 ORTHO05D004134 1.6e-55 220.7 297 50.2
CAN.G986.45 Capsicum annuum HOM05D001260 ORTHO05D004134 2.8e-55 219.9 310 48.7
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 2.8e-55 219.9 301 52.2
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 2.8e-55 219.9 294 52.4
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 4.8e-55 219.2 298 49.3
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 8.1e-55 218.4 298 51.0
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 1.4e-54 217.6 294 50.7
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 1.4e-54 217.6 297 49.5
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.4e-54 216.9 316 47.5
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 3.1e-54 216.5 296 51.0
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 6.9e-54 215.3 299 49.2
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 9.0e-54 214.9 316 47.5
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 1.5e-53 214.2 323 45.8
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.5e-53 214.2 316 47.5
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.5e-53 214.2 316 47.8
TPR.G25828 Trifolium pratense HOM05D001260 ORTHO05D004134 2.0e-53 213.8 291 49.8
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.6e-53 213.4 316 47.8
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 2.6e-53 213.4 290 49.7
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 4.4e-53 212.6 299 51.2
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 5.8e-53 212.2 294 52.0
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 1.3e-52 211.1 306 49.0
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 1.3e-52 211.1 310 48.1
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 1.3e-52 211.1 291 49.1
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 1.1e-51 208.0 305 49.5
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 5.4e-51 205.7 291 50.2
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 1.6e-50 204.1 305 48.2
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 6.0e-50 202.2 280 51.1
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 7.8e-50 201.8 309 47.2
Gorai.011G270500 Gossypium raimondii HOM05D001260 ORTHO05D004134 3.0e-49 199.9 297 48.1
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 6.6e-49 198.7 310 46.1
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 6.6e-49 198.7 309 45.3
Sabra10G0152200 Salix brachista HOM05D001260 ORTHO05D004134 4.8e-47 192.6 322 45.7
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 8.1e-47 191.8 374 39.8
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 1.1e-46 191.4 299 44.1
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 2.4e-46 190.3 300 46.7
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 4.0e-46 189.5 260 50.8
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 2.0e-45 187.2 305 45.2
Ciclev10030832m.g Citrus clementina HOM05D001260 ORTHO05D004134 7.6e-45 185.3 340 42.9
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 9.9e-45 184.9 297 46.8
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 9.9e-45 184.9 296 45.6
FvH4_7g23851 Fragaria vesca HOM05D001260 ORTHO05D004134 2.9e-44 183.3 245 50.2
Solyc03g079920.3 Solanum lycopersicum HOM05D001260 ORTHO05D004134 4.9e-44 182.6 305 44.3
Sopen03g027210 Solanum pennellii HOM05D001260 ORTHO05D004134 6.4e-44 182.2 302 44.7
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 8.4e-44 181.8 300 45.3
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 1.1e-43 181.4 294 44.6
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 1.2e-42 177.9 305 44.6
Nitab4.5_0000779g0070 Nicotiana tabacum HOM05D001260 ORTHO05D004134 1.2e-42 177.9 291 45.0
Nitab4.5_0004474g0060 Nicotiana tabacum HOM05D001260 ORTHO05D004134 3.5e-42 176.4 274 46.4
PGSC0003DMG400021693 Solanum tuberosum HOM05D001260 ORTHO05D004134 3.5e-42 176.4 310 44.2
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 7.9e-42 175.3 307 44.6
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 1.8e-41 174.1 303 43.6
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 1.8e-41 174.1 314 42.4
CAN.G986.46 Capsicum annuum HOM05D001260 ORTHO05D004134 3.0e-41 173.3 237 49.8
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 1.5e-40 171.0 300 43.0
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 3.3e-40 169.9 298 42.3
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 9.6e-40 168.3 289 42.6
Sc05g0005760 Simmondsia chinensis HOM05D001260 ORTHO05D004134 2.8e-39 166.8 204 51.5
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 3.7e-39 166.4 298 41.3
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 4.0e-38 162.9 315 42.5
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 1.0e-36 158.3 293 43.7
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 6.5e-36 155.6 291 42.6
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 3.2e-35 153.3 291 43.0
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 1.2e-34 151.4 306 39.9
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 1.2e-34 151.4 306 39.9
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 1.6e-34 151.0 291 42.6
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 2.1e-34 150.6 311 41.8
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 2.1e-34 150.6 303 39.3
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 2.1e-34 150.6 303 39.3
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 2.1e-34 150.6 297 41.1
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 2.7e-34 150.2 289 40.5
Gorai.011G270300 Gossypium raimondii HOM05D001260 ORTHO05D004134 5.1e-33 146.0 176 53.4
Potri.010G197700 Populus trichocarpa HOM05D001260 ORTHO05D004134 1.5e-32 144.4 198 49.0
HPP92_020548 Vanilla planifolia HOM05D001260 ORTHO05D004134 2.8e-31 140.2 299 41.8
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 2.4e-30 137.1 310 37.4
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 2.2e-28 130.6 305 37.7
Rhsim08G0019600 Rhododendron simsii HOM05D001260 ORTHO05D004134 1.6e-26 124.4 288 38.9
Thecc.10G033600 Theobroma cacao HOM05D001260 ORTHO05D004134 3.5e-26 123.2 132 56.8
Pp3c3_3110 Physcomitrium patens HOM05D001260 ORTHO05D004134 3.1e-22 110.2 316 32.9
Gohir.D10G236624 Gossypium hirsutum HOM05D001260 ORTHO05D004134 5.3e-22 109.4 97 62.9
Duzib128G0118 Durio zibethinus HOM05D001260 ORTHO05D004134 1.3e-20 104.8 102 57.8
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.1e-19 101.7 317 31.2
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 4.2e-19 99.8 278 35.3
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 5.5e-19 99.4 294 33.0
Pp3c13_5000 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.7e-18 97.1 314 30.3
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.4e-17 94.7 310 33.5
AagrBONN_evm.TU.Sc2ySwM_344.891 Anthoceros agrestis HOM05D001260 ORTHO05D004134 6.7e-17 92.4 290 33.4
Oeu031370.1 Olea europaea HOM05D001260 ORTHO05D004134 6.7e-17 92.4 112 50.0
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 3.7e-15 86.7 316 30.7
Rhsim04G0027700 Rhododendron simsii HOM05D001260 ORTHO05D004134 3.7e-15 86.7 256 33.2
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 4.1e-14 83.2 318 28.9
RcHm_v2.0_Chr4g0410241 Rosa chinensis HOM05D001260 ORTHO05D004134 4.5e-13 79.7 61 67.2
Ah.13g074360 Amaranthus hybridus HOM05D001260 ORTHO05D004134 1.9e-11 74.3 81 54.3
Gorai.011G270200 Gossypium raimondii HOM05D001260 ORTHO05D004134 9.4e-11 72.0 52 67.3
CBR_g37200 Chara braunii HOM05D001260 ORTHO05D004134 1.4e-09 68.2 137 34.3
RcHm_v2.0_Chr1g0315431 Rosa chinensis HOM05D001260 ORTHO05D004134 1.4e-09 68.2 88 46.6
RcHm_v2.0_Chr1g0324411 Rosa chinensis HOM05D001260 ORTHO05D004134 1.4e-09 68.2 88 46.6
RcHm_v2.0_Chr1g0369591 Rosa chinensis HOM05D001260 ORTHO05D004134 5.1e-09 66.2 88 45.5
COL.COLO4_36753 Corchorus olitorius HOM05D001260 ORTHO05D004134 1.1e-08 65.1 167 33.5


User provided reference genes

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