Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21808 Selenicereus undatus HOM05D003334 ORTHO05D004076 1.8e-47 192.2 95 100.0
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 2.9e-37 158.3 89 85.4
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 1.4e-36 156.0 79 91.1
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 1.4e-36 156.0 89 84.3
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 1.4e-36 156.0 90 85.6
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.4e-36 156.0 86 87.2
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 1.4e-36 156.0 83 88.0
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 2.5e-36 155.2 89 84.3
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 2.5e-36 155.2 86 86.0
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 3.2e-36 154.8 79 91.1
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 3.2e-36 154.8 79 91.1
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 3.2e-36 154.8 87 85.1
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 3.2e-36 154.8 86 84.9
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 5.5e-36 154.1 89 84.3
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 7.2e-36 153.7 86 83.7
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 9.4e-36 153.3 89 83.1
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 1.6e-35 152.5 84 84.5
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 1.6e-35 152.5 91 79.1
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 1.6e-35 152.5 89 79.8
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 2.1e-35 152.1 89 85.4
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 2.1e-35 152.1 79 88.6
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 2.7e-35 151.8 87 82.8
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 2.7e-35 151.8 87 82.8
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 2.7e-35 151.8 87 82.8
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 1.0e-34 149.8 88 78.4
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 2.3e-34 148.7 92 79.3
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 2.3e-34 148.7 92 79.3
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 2.3e-34 148.7 88 79.5
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 3.0e-34 148.3 86 79.1
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 3.0e-34 148.3 93 80.6
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 3.0e-34 148.3 84 79.8
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 5.2e-34 147.5 91 81.3
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 5.2e-34 147.5 89 78.7
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 6.7e-34 147.1 89 79.8
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 8.8e-34 146.7 92 78.3
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 8.8e-34 146.7 89 80.9
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 8.8e-34 146.7 86 80.2
Hund21807 Selenicereus undatus HOM05D003334 ORTHO05D022509 8.8e-34 146.7 75 98.7
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 8.8e-34 146.7 92 78.3
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-33 146.4 89 77.5
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-33 146.4 89 77.5
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 1.1e-33 146.4 89 77.5
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 1.1e-33 146.4 89 77.5
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 1.1e-33 146.4 89 77.5
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 1.1e-33 146.4 89 77.5
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.5e-33 146.0 89 78.7
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 2.0e-33 145.6 89 77.5
CARHR078780 Cardamine hirsuta HOM05D003334 ORTHO05D004076 2.0e-33 145.6 89 78.7
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 2.0e-33 145.6 92 77.2
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 2.0e-33 145.6 92 78.3
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 2.0e-33 145.6 85 78.8
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 2.6e-33 145.2 75 88.0
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 3.3e-33 144.8 87 78.2
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 3.3e-33 144.8 87 78.2
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 3.3e-33 144.8 89 76.4
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 3.3e-33 144.8 88 76.1
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 4.4e-33 144.4 86 79.1
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 4.4e-33 144.4 94 76.6
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 4.4e-33 144.4 86 76.7
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 5.7e-33 144.1 90 75.6
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 5.7e-33 144.1 87 80.5
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 5.7e-33 144.1 84 78.6
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 5.7e-33 144.1 86 76.7
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 7.4e-33 143.7 87 83.9
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 7.4e-33 143.7 86 76.7
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 9.7e-33 143.3 89 76.4
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 9.7e-33 143.3 89 76.4
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 9.7e-33 143.3 89 76.4
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 9.7e-33 143.3 86 76.7
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 9.7e-33 143.3 77 87.0
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 9.7e-33 143.3 79 81.0
Oeu028126.2 Olea europaea HOM05D003334 ORTHO05D004076 9.7e-33 143.3 79 84.8
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.7e-32 142.5 79 82.3
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 1.7e-32 142.5 81 81.5
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 2.2e-32 142.1 83 74.7
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 2.2e-32 142.1 91 74.7
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 2.2e-32 142.1 89 74.2
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 2.8e-32 141.7 92 77.2
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.8e-32 141.7 89 78.7
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 3.7e-32 141.4 93 72.0
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 3.7e-32 141.4 77 81.8
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 4.8e-32 141.0 87 78.2
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 4.8e-32 141.0 80 77.5
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 6.3e-32 140.6 88 76.1
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 6.3e-32 140.6 92 77.2
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 8.2e-32 140.2 87 78.2
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 8.2e-32 140.2 87 78.2
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 8.2e-32 140.2 88 80.7
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 8.2e-32 140.2 85 76.5
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 8.2e-32 140.2 92 75.0
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 8.2e-32 140.2 89 77.5
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 1.4e-31 139.4 90 73.3
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 1.4e-31 139.4 84 78.6
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 1.8e-31 139.0 86 76.7
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 2.4e-31 138.7 87 75.9
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 2.4e-31 138.7 75 84.0
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 3.1e-31 138.3 75 82.7
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 4.1e-31 137.9 76 82.9
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 4.1e-31 137.9 81 76.5
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 4.1e-31 137.9 89 73.0
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 7.0e-31 137.1 85 74.1
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 9.1e-31 136.7 90 71.1
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 1.2e-30 136.3 77 81.8
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 1.2e-30 136.3 77 81.8
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.2e-30 136.3 79 83.5
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 1.6e-30 136.0 81 79.0
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 2.6e-30 135.2 78 84.6
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 2.6e-30 135.2 74 79.7
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 3.5e-30 134.8 80 76.2
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 3.5e-30 134.8 76 85.5
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 3.5e-30 134.8 84 71.4
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 4.5e-30 134.4 95 69.5
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 5.9e-30 134.0 90 75.6
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 7.7e-30 133.7 86 75.6
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 1.0e-29 133.3 95 68.4
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 1.0e-29 133.3 95 68.4
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 1.7e-29 132.5 95 66.3
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 1.7e-29 132.5 79 73.4
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 2.2e-29 132.1 76 80.3
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 2.2e-29 132.1 82 80.5
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.9e-29 131.7 85 75.3
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 3.8e-29 131.3 85 75.3
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 5.0e-29 131.0 79 74.7
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 1.1e-28 129.8 98 67.3
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 1.1e-28 129.8 86 74.4
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 1.1e-28 129.8 81 71.6
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 1.9e-28 129.0 81 76.5
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 2.5e-28 128.6 76 78.9
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 3.2e-28 128.3 101 64.4
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 3.2e-28 128.3 76 78.9
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 3.2e-28 128.3 77 74.0
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 4.2e-28 127.9 93 69.9
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 7.2e-28 127.1 87 70.1
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 7.2e-28 127.1 85 72.9
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 2.7e-27 125.2 93 68.8
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 2.7e-27 125.2 75 76.0
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 1.8e-26 122.5 79 69.6
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 4.0e-26 121.3 89 67.4
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 1.3e-24 116.3 81 64.2
FAN08G2131 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.7e-24 115.9 64 79.7
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 1.4e-23 112.8 75 62.7
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 4.1e-23 111.3 79 69.6
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 7.0e-23 110.5 76 64.5
Dinv11744 Davidia involucrata HOM05D003334 ORTHO05D022509 1.6e-22 109.4 63 81.0
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 2.0e-22 109.0 79 68.4
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 2.7e-22 108.6 93 59.1
Dinv13219 Davidia involucrata HOM05D000386 ORTHO05D000406 2.7e-22 108.6 63 84.1
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 1.3e-21 106.3 93 58.1
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 3.8e-21 104.8 86 58.1
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 5.0e-21 104.4 91 53.8
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 5.0e-21 104.4 76 59.2
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 7.2e-20 100.5 89 57.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 9.4e-20 100.1 85 57.6
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 2.7e-19 98.6 76 53.9
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.0e-18 96.7 76 53.9
Sed0022912 Sechium edule HOM05D003334 ORTHO05D022509 1.3e-13 79.7 60 63.3
Haze_26816 Corylus avellana HOM05D003334 ORTHO05D004076 1.2e-11 73.2 79 41.8
SGA_v2.0_scaffold269G46297 Striga asiatica HOM05D003334 ORTHO05D004076 9.8e-09 63.5 84 44.0
Peaxi162Scf00020g00242 Petunia axillaris HOM05D003334 ORTHO05D004076 1.3e-08 63.2 43 60.5
FAN01G1786 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.7e-08 62.8 46 67.4
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.2e-08 62.4 57 57.9
FvH4_5g27321 Fragaria vesca HOM05D003334 ORTHO05D022509 3.7e-08 61.6 57 57.9
FAN13G3113 Fragaria x ananassa HOM05D003334 ORTHO05D022509 3.7e-08 61.6 57 57.9
FAN18G4190 Fragaria x ananassa HOM05D003334 ORTHO05D022509 3.7e-08 61.6 54 57.4


User provided reference genes

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