Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.5e-304 1048.9 615 100.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.5e-179 633.6 703 59.5
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.3e-175 620.5 733 56.3
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.1e-158 564.3 706 50.7
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 6.9e-156 555.1 708 57.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.3e-154 550.8 697 57.1
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 3.2e-153 546.2 704 56.1
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.3e-149 534.3 705 55.7
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.2e-149 533.5 705 53.0
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.4e-147 526.2 704 54.8
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 5.9e-147 525.4 701 55.6
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 5.9e-147 525.4 702 56.0
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.9e-146 523.1 703 55.8
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.1e-145 521.2 705 51.8
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.6e-144 517.3 706 52.8
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 2.7e-144 516.5 700 53.3
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 8.0e-144 515.0 709 53.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.0e-143 514.6 631 58.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.8e-143 513.8 709 52.9
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 3.9e-143 512.7 702 55.0
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.6e-142 510.0 711 50.2
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.2e-141 506.9 699 55.4
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.7e-141 506.1 707 51.6
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.7e-141 506.1 705 53.6
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-140 504.6 699 54.8
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.4e-140 504.2 711 50.8
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 3.1e-140 503.1 705 55.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.3e-140 502.3 710 51.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.3e-140 502.3 699 55.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.6e-139 500.0 699 55.1
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 2.6e-139 500.0 710 52.4
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.5e-139 499.6 699 55.2
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 5.9e-139 498.8 702 46.6
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 5.9e-139 498.8 707 52.9
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.3e-138 497.7 705 54.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.3e-138 497.7 704 54.5
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-138 497.3 699 54.6
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.2e-137 493.0 699 54.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.6e-136 490.7 689 53.4
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 2.1e-136 490.3 707 49.5
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.2e-134 484.6 701 52.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.3e-133 481.1 710 51.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.8e-133 479.9 707 48.1
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.1e-132 478.0 707 51.5
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.4e-132 477.6 704 52.8
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.8e-132 477.2 683 53.4
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 7.0e-132 475.3 731 49.5
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.2e-131 474.6 705 51.9
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.7e-131 473.4 705 50.6
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 5.9e-131 472.2 770 39.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.0e-130 471.5 761 44.4
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.3e-130 471.1 700 45.3
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.9e-130 469.9 722 48.5
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 3.8e-130 469.5 707 51.2
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.5e-130 468.4 731 48.2
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.5e-129 467.6 707 48.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.5e-129 466.8 702 50.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.2e-129 466.5 732 50.1
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 9.4e-129 464.9 537 50.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.7e-128 463.4 697 50.8
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.7e-128 462.6 712 49.3
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 6.1e-128 462.2 668 53.3
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 6.1e-128 462.2 706 49.0
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.8e-127 460.7 698 53.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 2.3e-127 460.3 701 51.8
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 3.0e-127 459.9 693 52.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.0e-127 459.9 697 49.1
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.0e-127 459.9 704 51.6
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.5e-126 457.6 622 48.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.0e-126 457.2 707 51.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 5.7e-126 455.7 704 50.6
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.7e-125 453.0 707 50.5
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 3.7e-125 453.0 700 44.9
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 6.3e-125 452.2 632 56.0
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 3.1e-124 449.9 683 52.4
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 7.0e-124 448.7 613 57.3
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 7.0e-124 448.7 704 47.6
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.6e-123 447.6 701 49.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.6e-123 447.6 706 50.7
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.5e-123 446.4 696 49.3
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 5.9e-123 445.7 699 50.8
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 7.7e-123 445.3 692 51.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.3e-122 444.5 697 51.9
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.9e-122 443.4 699 50.1
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 8.6e-122 441.8 698 48.9
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.5e-121 440.3 699 51.5
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.5e-121 440.3 700 50.4
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 5.5e-121 439.1 703 48.1
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.7e-120 436.0 703 49.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 6.1e-120 435.6 699 48.1
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 4.0e-119 433.0 702 49.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 5.2e-119 432.6 694 49.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 8.9e-119 431.8 702 49.1
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-118 431.4 699 47.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.6e-118 430.3 692 49.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 9.8e-118 428.3 694 48.3
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.3e-109 401.4 713 47.3
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 8.6e-106 388.7 701 41.9
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.6e-104 384.4 634 52.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.3e-101 374.8 698 41.0
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.7e-101 373.2 709 41.7
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.7e-101 373.2 705 44.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.2e-99 368.2 699 40.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.6e-98 362.5 716 35.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.8e-95 354.4 564 48.9
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.5e-94 351.3 694 39.8
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 6.4e-93 345.9 705 44.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.0e-90 338.6 695 37.7
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.8e-87 327.8 715 38.9
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.0e-86 324.3 474 55.3
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.4e-86 323.2 620 50.2
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-85 320.1 527 43.3
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 2.3e-82 310.8 523 48.6
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-81 307.4 520 47.7
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.8e-79 301.2 711 34.3
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 9.0e-79 298.9 316 58.5
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.7e-75 287.3 531 45.6
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.8e-71 274.6 705 41.0
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.6e-64 251.5 523 39.6
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.1e-64 251.1 586 36.3
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 8.1e-64 249.2 254 74.4
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.1e-60 238.8 276 63.4
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.3e-60 235.7 527 33.6
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.3e-57 227.3 398 50.0
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 5.8e-54 216.5 318 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.2e-48 198.0 485 31.5
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.1e-47 195.7 124 76.6
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.5e-46 191.8 276 50.4
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.2e-45 188.0 188 51.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.2e-45 188.0 351 38.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 6.7e-42 176.4 239 43.5
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 5.7e-41 173.3 122 70.5
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-40 172.2 474 30.0
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-38 165.6 487 29.2
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-36 157.5 121 65.3
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.0e-34 152.5 134 62.7
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.0e-34 151.0 282 42.2
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.7e-33 146.7 188 53.7
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.7e-32 144.1 122 58.2
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.4e-31 142.1 129 55.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.5e-30 138.7 239 46.0
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.2e-28 131.0 152 57.2
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 7.4e-25 119.8 122 49.2
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 9.7e-25 119.4 109 55.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.7e-24 118.6 108 61.1
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.1e-23 115.9 140 60.7
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-22 110.9 98 59.2
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.5e-22 110.5 71 71.8
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.7e-22 109.8 91 62.6
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 3.6e-19 100.9 141 38.3
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 4.0e-18 97.4 145 40.0
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.3e-16 92.4 507 27.4
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 7.0e-15 86.7 120 36.7
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 9.1e-15 86.3 96 50.0
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 3.5e-14 84.3 290 28.6
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.7e-14 83.2 58 69.0
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-13 82.0 58 67.2
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.5e-13 79.7 58 65.5
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-12 79.3 116 43.1
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-12 78.6 58 65.5
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-12 78.2 58 65.5
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-12 78.2 58 65.5
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.2e-12 76.6 100 44.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.2e-12 76.6 100 44.0
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-11 75.9 96 44.8
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-11 75.9 100 44.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.7e-11 74.7 46 69.6
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 6.1e-11 73.6 76 48.7
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 1.0e-10 72.8 257 26.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.4e-10 72.4 267 27.0
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.8e-10 72.0 74 54.1
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 2.3e-10 71.6 90 47.8
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-09 67.4 100 40.0
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.7e-08 65.5 31 90.3
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.7e-08 64.3 100 39.0
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-07 62.0 100 40.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-07 61.6 99 39.4
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 4.1e-07 60.8 129 36.4
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 5.4e-07 60.5 55 52.7


User provided reference genes

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