Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 3.0e-177 625.2 337 100.0
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 8.6e-100 367.9 305 67.2
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 8.1e-90 334.7 305 63.9
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.8e-81 307.0 269 63.9
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 7.3e-75 285.0 311 54.0
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.4e-73 280.0 328 51.5
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.2e-72 277.7 307 52.1
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 5.8e-72 275.4 331 50.8
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 5.8e-72 275.4 307 53.7
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.2e-71 273.5 305 54.8
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 3.2e-70 269.6 326 51.5
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.2e-69 267.7 310 52.9
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.6e-69 267.3 323 52.3
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 2.1e-69 266.9 323 51.4
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 3.5e-69 266.2 305 54.4
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 3.5e-69 266.2 333 52.0
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 4.6e-69 265.8 316 52.2
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 6.0e-69 265.4 304 50.0
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 6.0e-69 265.4 322 48.8
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 1.7e-68 263.8 308 53.2
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 2.3e-68 263.5 337 48.4
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 3.9e-68 262.7 333 50.8
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.1e-67 261.2 310 52.6
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 1.9e-67 260.4 371 46.9
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 5.6e-67 258.8 333 50.2
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 9.6e-67 258.1 325 51.1
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 9.6e-67 258.1 315 50.2
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.3e-66 257.7 333 51.1
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 2.1e-66 256.9 308 50.6
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 3.6e-66 256.1 332 49.7
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 8.1e-66 255.0 326 48.2
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 1.4e-65 254.2 331 49.5
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 2.4e-65 253.4 310 50.3
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 3.1e-65 253.1 320 54.4
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 3.1e-65 253.1 312 52.9
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 6.9e-65 251.9 311 50.2
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 1.2e-64 251.1 380 45.0
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 2.0e-64 250.4 342 48.5
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 2.6e-64 250.0 321 48.3
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.7e-63 247.3 274 55.8
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 2.2e-63 246.9 345 48.7
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.8e-63 246.1 284 51.4
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 8.4e-63 245.0 310 49.4
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.4e-62 244.2 342 47.7
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 2.4e-62 243.4 329 48.0
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 3.2e-62 243.0 310 48.7
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.2e-62 242.7 307 49.5
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 4.2e-62 242.7 304 48.0
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 5.5e-62 242.3 343 46.4
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 5.5e-62 242.3 307 48.9
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 1.0e-60 238.0 333 45.9
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.3e-60 237.7 401 42.1
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.3e-60 236.9 307 49.5
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 1.5e-59 234.2 369 42.0
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.5e-59 233.4 336 46.1
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.3e-58 231.1 347 44.4
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 4.8e-58 229.2 307 49.8
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 2.4e-57 226.9 315 48.6
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.1e-57 226.5 272 50.7
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 9.0e-57 224.9 301 47.8
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 2.0e-56 223.8 298 46.6
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.3e-55 221.1 329 45.6
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 6.5e-55 218.8 350 44.9
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 8.4e-55 218.4 365 40.8
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.5e-54 216.9 310 46.5
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 3.2e-54 216.5 314 48.4
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 8.7e-52 208.4 296 45.9
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.1e-50 203.8 332 42.8
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 8.2e-50 201.8 304 43.8
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 4.1e-49 199.5 326 44.5
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 9.0e-49 198.4 347 41.2
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 1.2e-48 198.0 361 40.4
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.0e-48 197.2 284 46.1
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 1.3e-47 194.5 339 43.4
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 5.0e-47 192.6 357 41.2
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 3.2e-46 189.9 322 40.7
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 3.2e-46 189.9 347 42.7
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.3e-44 183.7 284 46.5
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.5e-43 180.3 387 39.0
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 4.3e-43 179.5 306 39.2
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 2.8e-42 176.8 391 37.9
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.2e-42 175.3 271 44.6
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.1e-41 174.9 309 42.4
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 4.1e-41 172.9 358 39.1
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 9.0e-41 171.8 222 45.5
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.0e-39 168.3 348 37.9
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 2.5e-38 163.7 278 41.7
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 9.4e-38 161.8 247 44.5
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 9.4e-38 161.8 247 44.5
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 9.4e-38 161.8 285 40.4
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.6e-37 161.0 309 41.7
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 6.1e-37 159.1 260 42.3
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 7.9e-37 158.7 390 35.1
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.0e-36 156.8 135 62.2
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 5.1e-36 156.0 272 40.1
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 5.1e-36 156.0 272 40.1
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 8.8e-36 155.2 256 43.8
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.1e-35 154.8 257 44.4
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 2.0e-35 154.1 277 40.4
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 3.3e-35 153.3 268 38.4
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 3.3e-35 153.3 320 38.4
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.3e-34 151.4 392 34.9
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.8e-34 150.2 138 65.9
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 4.8e-34 149.4 268 41.8
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 6.3e-34 149.1 394 34.8
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 6.3e-34 149.1 285 40.7
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 4.5e-32 142.9 229 42.4
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 8.5e-31 138.7 201 44.8
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.2e-30 136.3 130 57.7
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.4e-28 131.3 129 58.1
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.6e-27 127.1 209 44.5
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 2.6e-27 127.1 175 48.0
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.1e-25 120.2 144 50.0
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 2.0e-24 117.5 125 60.8
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.4e-20 104.8 108 58.3
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.4e-20 104.8 108 58.3
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 9.7e-19 98.6 104 54.8
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 8.2e-18 95.5 132 43.2
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 5.3e-17 92.8 206 36.4
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 7.0e-17 92.4 114 52.6
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 3.5e-16 90.1 59 67.8
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 3.5e-16 90.1 62 66.1
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 6.5e-15 85.9 61 68.9
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 6.8e-12 75.9 118 39.8
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.4e-09 67.4 139 33.1
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 5.9e-08 62.8 179 32.4
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 1.1e-06 58.5 47 63.8
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 1.5e-06 58.2 141 30.5


User provided reference genes

Program Settings