Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 5.2e-72 274.2 136 100.0
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.7e-65 251.1 136 89.0
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 5.2e-64 247.7 136 87.5
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.6e-63 245.4 136 86.8
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.2e-62 242.3 136 87.5
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 8.4e-62 240.4 136 86.8
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.1e-61 240.0 136 86.8
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 86.0
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 86.8
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 86.0
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 86.0
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.0
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 7.1e-61 237.3 131 88.5
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 9.2e-61 236.9 136 85.3
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 85.3
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 85.3
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 85.3
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 84.6
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 3.5e-60 235.0 134 85.8
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 3.5e-60 235.0 136 84.6
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 86.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 84.6
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 84.6
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 6.0e-60 234.2 136 83.8
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 7.8e-60 233.8 131 87.0
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 7.8e-60 233.8 131 87.0
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 7.8e-60 233.8 131 86.3
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.3e-59 233.0 136 86.0
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 85.3
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.7e-59 232.6 135 84.4
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.3e-59 232.3 136 85.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 2.3e-59 232.3 136 83.8
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.1
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.1
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 84.6
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 84.6
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.1
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 5.1e-59 231.1 136 83.8
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 5.1e-59 231.1 136 83.8
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 5.1e-59 231.1 136 83.8
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 6.6e-59 230.7 136 83.8
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 6.6e-59 230.7 136 83.1
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 6.6e-59 230.7 131 87.0
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 8.7e-59 230.3 131 86.3
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.8
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.1e-58 229.9 131 85.5
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.5e-58 229.6 131 84.7
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-58 229.2 134 81.3
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 2.5e-58 228.8 131 85.5
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 131 85.5
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 131 85.5
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 2.5e-58 228.8 131 85.5
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 2.5e-58 228.8 136 83.1
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 5.6e-58 227.6 136 83.1
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.6e-58 227.6 131 84.7
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 5.6e-58 227.6 131 86.3
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 5.6e-58 227.6 131 84.7
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 7.3e-58 227.3 131 85.5
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 7.3e-58 227.3 141 82.3
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 7.3e-58 227.3 136 82.4
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.6e-58 226.9 129 85.3
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 9.6e-58 226.9 132 81.8
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 9.6e-58 226.9 136 83.1
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 1.2e-57 226.5 136 83.1
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-57 226.1 136 82.4
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.1e-57 225.7 131 84.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 2.1e-57 225.7 131 84.7
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.8e-57 225.3 131 84.7
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 4.7e-57 224.6 131 83.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 4.7e-57 224.6 127 85.0
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 6.2e-57 224.2 136 82.4
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 6.2e-57 224.2 131 84.7
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 6.2e-57 224.2 130 83.8
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 8.1e-57 223.8 136 82.4
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 1.1e-56 223.4 131 84.0
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 1.1e-56 223.4 131 84.0
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.4e-56 223.0 131 84.0
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.4e-56 223.0 132 83.3
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.8e-56 222.6 136 81.6
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.8e-56 222.6 136 81.6
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.8e-56 222.6 136 81.6
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 3.1e-56 221.9 129 82.9
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 3.1e-56 221.9 136 81.6
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 3.1e-56 221.9 136 82.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 5.2e-56 221.1 138 80.4
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 9.0e-56 220.3 131 83.2
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.5e-55 219.5 138 79.7
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 5.8e-55 217.6 136 77.9
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 9.9e-55 216.9 137 78.8
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.2e-54 215.7 168 67.9
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 2.2e-54 215.7 126 82.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.9e-54 215.3 136 77.9
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 6.4e-54 214.2 200 58.5
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 6.4e-54 214.2 168 67.3
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-53 213.0 154 71.4
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 7.1e-53 210.7 136 76.5
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 7.1e-53 210.7 128 79.7
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 9.3e-53 210.3 136 77.2
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 3.0e-51 205.3 125 80.8
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.9e-50 202.6 136 73.5
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 4.3e-50 201.4 184 59.8
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.6e-49 199.5 130 76.2
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.1e-49 197.2 136 70.6
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.5e-47 193.0 136 75.0
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.4e-47 191.8 136 66.9
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.4e-47 191.8 136 68.4
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 1.9e-45 186.0 137 72.3
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.2e-45 185.3 131 74.0
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 3.2e-45 185.3 102 87.3
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.1e-44 182.6 131 64.9
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.3e-43 179.1 137 62.0
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 5.6e-42 174.5 131 65.6
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 7.4e-42 174.1 127 70.1
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.3e-41 173.3 123 66.7
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.1e-41 172.6 144 66.0
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 1.7e-38 162.9 130 60.8
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.4e-37 159.8 116 69.8
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 9.3e-37 157.1 85 91.8
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 6.0e-36 154.5 93 83.9
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 5.1e-35 151.4 79 88.6
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 3.3e-34 148.7 89 80.9
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 7.4e-34 147.5 89 79.8
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 7.4e-34 147.5 89 79.8
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 7.4e-34 147.5 135 61.5
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.6e-34 147.1 85 80.0
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 3.7e-33 145.2 86 84.9
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 6.2e-33 144.4 86 82.6
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.1e-32 143.7 85 84.7
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-32 142.5 97 73.2
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-32 142.5 85 78.8
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.4e-31 138.7 86 80.2
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.4e-30 134.0 92 72.8
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 4.2e-29 131.7 105 68.6
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.5e-29 131.3 75 81.3
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.2e-28 130.2 71 83.1
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.5e-28 128.6 90 72.2
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.0e-27 125.6 89 74.2
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.9e-27 125.2 68 83.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.9e-21 106.3 65 76.9
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.1e-20 101.3 91 56.0
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 7.4e-18 94.4 91 56.0
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 2.0e-15 86.3 46 80.4
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.7e-15 84.3 91 50.5
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 7.7e-15 84.3 45 80.0
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 3.0e-11 72.4 55 70.9
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 2.0e-10 69.7 41 78.0
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.1e-08 63.9 42 73.8
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-06 57.0 57 54.4


User provided reference genes

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