Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 1.5e-272 942.2 449 100.0
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 2.2e-207 725.7 495 69.7
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 4.1e-206 721.5 520 68.5
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 2.9e-204 715.3 482 70.7
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 3.8e-204 714.9 494 68.4
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 5.0e-204 714.5 491 69.7
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 8.5e-204 713.8 493 69.4
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 8.5e-204 713.8 478 71.8
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 1.1e-203 713.4 570 63.2
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.1e-203 713.4 491 70.3
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 7.2e-203 710.7 503 68.0
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 2.1e-202 709.1 478 69.9
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 1.0e-201 706.8 480 69.6
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 1.0e-201 706.8 481 69.2
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.4e-201 706.4 489 68.7
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 1.4e-201 706.4 487 69.2
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 3.0e-201 705.3 473 71.5
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 4.0e-201 704.9 474 69.8
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 5.2e-201 704.5 492 68.7
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 5.2e-201 704.5 473 71.5
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 5.2e-201 704.5 492 68.9
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 8.8e-201 703.7 483 68.9
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 1.2e-200 703.4 481 69.0
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 1.5e-200 703.0 474 69.2
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 2.6e-200 702.2 491 68.4
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 1.7e-199 699.5 491 68.0
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 2.2e-199 699.1 488 67.4
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 6.3e-199 697.6 473 70.0
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 9.1e-198 693.7 491 68.6
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.2e-197 693.3 487 67.1
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 1.2e-197 693.3 487 68.2
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 2.0e-197 692.6 487 67.1
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.0e-197 692.6 481 69.0
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 2.7e-197 692.2 482 67.2
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 2.7e-197 692.2 484 68.2
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 1.0e-196 690.3 488 68.2
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 1.3e-196 689.9 493 66.9
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 6.5e-196 687.6 484 70.0
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 1.5e-195 686.4 520 65.0
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.9e-195 686.0 483 67.1
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 4.2e-195 684.9 511 65.0
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 7.2e-195 684.1 484 68.2
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 2.7e-194 682.2 490 66.5
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 3.6e-194 681.8 487 66.5
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 6.1e-194 681.0 483 68.1
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 8.0e-194 680.6 499 65.7
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 8.0e-194 680.6 477 69.4
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.8e-193 679.5 552 62.1
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 1.8e-193 679.5 491 66.6
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 2.3e-193 679.1 476 69.1
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 3.0e-193 678.7 470 69.4
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 8.8e-193 677.2 527 63.4
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 1.2e-192 676.8 488 65.8
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 2.0e-192 676.0 482 67.6
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 2.0e-192 676.0 483 68.5
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 5.7e-192 674.5 498 65.7
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 9.8e-192 673.7 482 66.6
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 1.3e-191 673.3 478 69.0
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 1.3e-191 673.3 484 67.8
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.3e-191 673.3 516 63.2
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 4.8e-191 671.4 491 66.2
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 4.8e-191 671.4 434 73.5
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 7.0e-190 667.5 496 65.9
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 1.2e-189 666.8 494 65.4
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 2.0e-189 666.0 488 66.0
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 3.5e-189 665.2 449 69.9
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 5.9e-189 664.5 456 70.2
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.3e-188 663.3 485 66.4
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 2.9e-188 662.1 483 66.9
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 9.5e-187 657.1 492 65.4
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 8.0e-186 654.1 484 66.3
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 8.0e-186 654.1 446 70.6
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 4.9e-183 644.8 477 62.5
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 4.1e-182 641.7 478 65.1
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 7.0e-182 641.0 454 68.3
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 9.2e-182 640.6 483 65.4
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.6e-181 639.8 503 62.4
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 2.0e-181 639.4 469 64.4
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.2e-178 630.2 429 70.4
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 1.0e-177 627.1 487 63.4
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.2e-176 623.6 529 59.9
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.1e-169 600.5 455 63.1
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 5.2e-169 598.2 447 67.1
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 2.6e-168 595.9 475 60.6
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 9.8e-168 594.0 495 60.0
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 4.9e-167 591.7 506 60.1
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.5e-163 580.1 500 58.4
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 3.7e-159 565.5 498 55.6
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 6.4e-159 564.7 471 57.7
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 1.2e-157 560.5 471 56.5
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 4.6e-157 558.5 473 57.7
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.0e-148 530.8 484 57.2
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 8.7e-148 527.7 383 67.1
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 4.0e-145 518.8 390 65.9
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 3.4e-144 515.8 379 67.0
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 5.1e-140 501.9 380 64.7
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 1.5e-139 500.4 318 73.3
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.3e-138 497.3 359 69.1
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 1.2e-136 490.7 380 64.2
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 1.1e-134 484.2 471 51.6
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 1.8e-132 476.9 394 59.9
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 3.9e-132 475.7 480 51.5
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 8.1e-130 468.0 400 58.2
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.6e-122 443.7 243 83.1
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 2.2e-119 433.3 482 49.0
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 7.1e-118 428.3 288 69.4
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 5.0e-111 405.6 467 46.0
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.3e-108 396.7 280 67.1
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 3.0e-108 396.4 381 52.8
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 1.3e-106 391.0 453 44.2
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 4.2e-102 375.9 354 54.5
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.9e-95 353.2 344 52.6
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 6.1e-93 345.5 367 50.7
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 6.1e-93 345.5 182 83.5
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 6.8e-76 288.9 161 82.6
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 7.3e-54 215.7 248 46.4
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 2.7e-48 197.2 109 78.9
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.3e-47 194.1 94 87.2
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.0e-31 142.1 74 82.4
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 1.0e-31 142.1 70 84.3
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 2.3e-31 141.0 93 67.7
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 1.5e-27 128.3 131 51.9
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 4.9e-26 123.2 196 37.8
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 3.6e-21 107.1 199 33.7
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.1e-16 91.3 61 70.5
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 5.1e-15 86.7 54 75.9
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 1.3e-10 72.0 51 66.7
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.2e-10 71.2 47 63.8
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 4.3e-06 57.0 55 50.9


User provided reference genes

Program Settings