Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 2414.8 1201 100.0
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1946.8 1239 77.1
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1920.2 1206 78.2
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1866.7 1247 74.3
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1833.9 1239 73.4
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1823.1 1191 73.6
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1760.7 1208 70.7
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1758.4 1199 70.9
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1739.9 1209 69.0
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1726.5 1209 69.3
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1725.3 1209 70.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1718.7 1203 68.5
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1709.5 1209 68.8
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1704.1 1184 69.3
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1689.9 1177 69.2
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1686.4 1198 68.6
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1686.0 1198 69.1
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1681.0 1197 66.9
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1679.1 1197 68.5
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1676.0 1200 68.2
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1674.4 1200 68.2
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1666.7 1198 67.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1665.2 1247 65.8
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1664.8 1200 67.4
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1662.9 1200 67.4
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1659.8 1200 67.9
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1657.9 1193 66.8
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1652.5 1196 67.1
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1651.7 1201 66.4
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1644.0 1197 66.2
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1643.2 1204 66.4
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1642.1 1190 67.6
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1641.3 1204 65.7
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1637.9 1208 65.9
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1635.5 1217 66.0
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1634.4 1204 65.5
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1632.5 1185 66.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1632.1 1204 65.6
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1628.2 1206 66.3
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1205 65.7
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1200 65.4
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1625.9 1207 65.4
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1624.8 1217 65.5
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1624.4 1198 65.2
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1622.4 1207 65.1
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1622.1 1234 64.3
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1619.8 1184 66.2
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1617.8 1200 65.2
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1617.8 1207 64.6
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1616.3 1194 64.4
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1616.3 1207 64.9
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1615.9 1204 65.6
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1615.5 1186 66.8
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1602.0 1197 64.3
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1601.3 1201 64.8
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1596.6 1207 63.9
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1594.3 1215 65.6
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1593.6 1202 64.4
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1592.8 1197 64.0
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1587.8 1197 64.7
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1577.0 1203 64.9
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1576.2 1206 64.0
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1573.9 1206 63.9
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1573.5 1207 63.8
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1572.4 1161 65.6
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1571.2 1211 63.7
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1203 63.7
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1568.5 1205 64.5
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1567.7 1167 64.3
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1567.0 1210 64.0
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1566.6 1177 63.8
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1566.6 1204 64.5
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1566.2 1268 61.6
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1564.7 1196 64.9
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1559.7 1196 64.3
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1558.9 1210 64.0
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1555.8 1195 63.3
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1553.5 1220 63.2
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1552.0 1309 59.2
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1550.8 1213 62.4
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1550.8 1201 63.1
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1234 62.7
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1544.3 1140 65.0
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1542.3 1205 62.8
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1541.2 1201 62.9
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1539.2 1211 62.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1529.6 1186 62.6
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1496.5 1210 62.2
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1474.9 1204 60.2
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1460.3 1279 58.6
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1449.1 1031 68.5
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1447.2 1029 67.2
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1428.3 1200 59.2
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1426.4 1201 58.0
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1420.2 1203 58.0
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1369.0 976 69.0
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1334.7 993 66.0
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1318.1 1195 57.4
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1248.8 1203 55.1
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1245.0 1215 52.2
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1219.9 1197 53.5
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1186.4 1212 50.0
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1182.2 1219 53.2
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1181.4 1227 51.0
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1143.6 1179 48.0
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1088.9 841 61.8
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 8.2e-294 1014.2 862 59.5
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 6.0e-289 998.0 790 62.0
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.5e-274 949.5 724 64.4
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.0e-268 929.9 720 63.9
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.4e-261 907.1 1058 45.5
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 5.0e-243 845.5 1112 42.6
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 2.8e-233 813.1 1177 41.5
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 6.2e-225 785.4 587 65.6
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 3.0e-211 740.0 467 72.6
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.5e-207 727.6 567 64.2
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 6.2e-201 705.7 760 51.4
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.1e-200 704.9 488 69.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 5.9e-143 513.1 407 61.9
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 5.0e-142 510.0 411 62.3
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 3.4e-130 470.7 597 47.7
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.7e-126 458.4 722 38.0
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 9.5e-101 372.9 259 68.3
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 2.7e-87 328.2 385 46.5
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.7e-73 282.3 280 52.5
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.3e-60 239.6 175 68.0
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.4e-59 236.1 211 58.8
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 3.5e-55 221.5 281 41.3
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.9e-50 204.1 289 39.1
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 1.8e-46 192.6 236 44.5
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.5e-45 188.7 140 65.0
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 2.6e-29 135.6 154 48.1
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 5.9e-26 124.4 156 45.5
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 1.4e-22 113.2 72 69.4
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 2.0e-18 99.4 68 72.1
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 4.5e-18 98.2 203 35.5
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 4.9e-12 78.2 101 46.5
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.0e-10 72.8 312 22.4
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.1e-08 67.0 45 66.7
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 2.5e-08 65.9 86 47.7
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 4.3e-08 65.1 44 68.2
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.2e-07 63.5 94 42.6
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.0e-06 60.5 47 59.6


User provided reference genes

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