Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.9e-235 818.9 443 100.0
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 2.7e-154 549.3 458 69.4
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 8.5e-148 527.7 464 65.5
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 3.6e-146 522.3 480 57.9
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 4.4e-144 515.4 454 65.9
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 2.2e-143 513.1 457 65.6
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 1.5e-139 500.4 457 64.8
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 9.5e-139 497.7 453 65.3
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 2.8e-138 496.1 547 52.1
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.4e-137 493.8 456 59.6
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 4.0e-137 492.3 455 64.2
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.8e-137 491.5 455 64.6
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 8.9e-137 491.1 458 63.1
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 1.2e-136 490.7 456 62.5
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 1.5e-136 490.3 458 63.8
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 5.7e-136 488.4 456 62.9
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.2e-135 486.5 457 57.3
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 2.2e-135 486.5 457 57.3
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 2.8e-135 486.1 457 62.6
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 6.3e-135 485.0 458 62.4
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 8.3e-135 484.6 459 56.2
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 1.1e-134 484.2 454 64.3
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 2.7e-133 479.6 456 56.1
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.5e-131 473.8 454 61.2
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 3.3e-131 472.6 464 61.4
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 4.7e-130 468.8 438 57.5
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 8.0e-130 468.0 453 53.4
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.4e-129 467.2 447 53.9
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 1.5e-128 463.8 461 56.0
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 2.0e-128 463.4 498 58.0
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 7.5e-128 461.5 460 55.9
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.3e-127 460.7 470 50.6
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 1.7e-127 460.3 466 56.2
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.1e-126 457.6 484 56.6
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.9e-126 456.8 447 61.7
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 2.4e-126 456.4 490 57.1
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 2.4e-126 456.4 429 62.9
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 3.2e-126 456.1 486 50.2
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 4.1e-126 455.7 457 61.1
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 4.1e-126 455.7 479 54.7
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 5.4e-126 455.3 467 52.2
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 7.0e-126 454.9 502 49.0
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 4.6e-125 452.2 488 49.2
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 7.8e-125 451.4 465 54.2
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.7e-124 450.3 472 58.1
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 2.3e-124 449.9 461 57.7
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 8.6e-124 448.0 483 56.7
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.5e-123 447.2 491 48.5
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.5e-123 447.2 491 48.5
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 1.9e-123 446.8 488 51.2
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 2.5e-123 446.4 470 58.9
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 2.5e-123 446.4 474 52.1
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 7.3e-123 444.9 463 50.8
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 7.3e-123 444.9 453 59.6
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 9.5e-123 444.5 453 59.6
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.2e-122 444.1 498 48.0
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.2e-122 444.1 484 57.6
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 2.8e-122 443.0 463 50.3
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 4.7e-122 442.2 485 56.5
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 1.1e-121 441.0 462 58.2
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.4e-121 440.7 502 56.0
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 6.8e-121 438.3 465 58.3
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 6.8e-121 438.3 459 58.8
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 8.9e-121 438.0 529 46.5
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 3.4e-120 436.0 496 55.6
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 7.5e-120 434.9 457 51.4
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 1.3e-119 434.1 483 55.7
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 2.2e-119 433.3 432 53.9
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.9e-118 430.3 373 59.0
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 3.2e-118 429.5 508 49.0
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 1.3e-116 424.1 428 51.6
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 3.3e-115 419.5 428 51.6
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.4e-113 414.1 421 52.3
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 1.4e-113 414.1 489 51.3
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 3.1e-113 412.9 416 53.1
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.0e-112 410.2 380 54.5
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 9.9e-112 407.9 382 53.7
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 6.4e-111 405.2 490 51.8
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 4.1e-110 402.5 505 46.5
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.2e-109 401.0 373 55.2
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 1.2e-109 401.0 428 49.1
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.6e-109 400.6 543 43.1
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.6e-109 400.6 438 56.2
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 6.0e-109 398.7 484 46.1
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.0e-108 397.9 386 52.8
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 8.6e-108 394.8 384 53.4
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.8e-106 389.8 509 44.6
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 8.1e-106 388.3 446 54.3
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 1.5e-104 384.0 453 55.6
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 9.9e-104 381.3 459 46.2
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 7.1e-102 375.2 353 64.9
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 2.1e-101 373.6 409 58.2
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.5e-99 367.5 366 62.0
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 1.5e-99 367.5 408 56.9
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 3.3e-99 366.3 488 42.6
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 3.3e-99 366.3 377 60.7
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 4.3e-99 365.9 366 62.0
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 2.8e-98 363.2 468 45.7
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 3.6e-98 362.8 380 49.2
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 3.5e-93 346.3 393 47.1
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 2.3e-92 343.6 429 44.3
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 5.1e-92 342.4 428 44.4
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 1.1e-91 341.3 330 63.0
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 6.0e-85 318.9 380 46.1
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.8e-84 317.4 391 48.1
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 8.7e-84 315.1 319 54.2
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 3.3e-83 313.2 269 56.5
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 5.7e-75 285.8 497 41.9
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 6.2e-74 282.3 437 38.9
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 5.7e-67 259.2 248 66.1
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 3.4e-64 250.0 295 46.8
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 1.0e-63 248.4 246 52.4
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 3.1e-57 226.9 430 34.2
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 1.9e-46 191.0 107 79.4
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 7.2e-46 189.1 494 37.0
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 7.2e-46 189.1 494 37.0
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 2.6e-43 180.6 525 28.2
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 3.3e-43 180.3 244 44.3
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.0e-40 171.0 154 56.5
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 4.4e-35 153.3 154 51.9
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 8.3e-34 149.1 154 51.3
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 1.4e-33 148.3 153 49.0
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 2.2e-31 141.0 499 24.8
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 5.5e-30 136.3 181 43.6
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 3.6e-29 133.7 75 81.3
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 1.0e-28 132.1 81 74.1
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.8e-28 131.3 77 76.6
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 6.8e-28 129.4 81 72.8
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 6.8e-28 129.4 194 44.3
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 1.3e-26 125.2 117 53.0
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.3e-26 125.2 107 57.9
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 4.3e-22 110.2 67 76.1
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 2.0e-19 101.3 76 63.2
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 2.9e-18 97.4 80 61.2
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 4.6e-16 90.1 72 54.2
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 1.2e-13 82.0 39 84.6
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 4.7e-13 80.1 375 20.3
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 1.4e-12 78.6 234 29.9
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 3.1e-12 77.4 464 23.3
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 3.1e-12 77.4 317 22.7
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 7.0e-09 66.2 391 19.9
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 1.2e-08 65.5 65 44.6
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 5.0e-07 60.1 292 22.3
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.5e-06 58.5 395 20.5
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.5e-06 58.5 395 20.5
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 1.9e-06 58.2 295 21.4
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 2.5e-06 57.8 295 21.7
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 4.3e-06 57.0 163 28.2


User provided reference genes

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