Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.4e-51 203.4 101 100.0
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.4e-50 201.8 101 99.0
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.8e-40 169.1 114 75.4
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.3e-38 160.6 111 73.9
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.4e-34 149.4 114 65.8
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.9e-34 149.1 102 74.5
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.5e-34 147.5 114 66.7
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 7.2e-34 147.1 114 66.7
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 7.2e-34 147.1 114 65.8
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 7.2e-34 147.1 114 65.8
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 9.3e-34 146.7 114 66.7
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 9.3e-34 146.7 114 64.9
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.2e-33 146.4 112 67.0
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.6e-33 146.0 113 65.5
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 2.1e-33 145.6 114 64.9
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.1e-33 145.6 114 64.9
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.1e-33 145.6 114 64.9
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.1e-33 145.6 114 64.9
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.0
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 2.7e-33 145.2 114 64.9
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 7.9e-33 143.7 114 64.0
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.0e-32 143.3 101 69.3
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 110 67.3
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 110 67.3
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 110 67.3
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 110 67.3
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 110 67.3
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 110 67.3
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 110 67.3
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 114 63.2
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 114 63.2
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-32 143.3 114 63.2
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.8e-32 142.5 114 64.9
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-32 142.5 114 64.9
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-32 142.5 114 64.9
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-32 142.5 114 64.9
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 1.8e-32 142.5 110 67.3
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-32 142.1 114 64.9
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 3.0e-32 141.7 114 63.2
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 3.0e-32 141.7 114 63.2
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 5.1e-32 141.0 110 65.5
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 5.1e-32 141.0 113 61.9
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 6.7e-32 140.6 115 63.5
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.5e-31 139.4 114 62.3
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.9e-31 139.0 110 64.5
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.9e-31 139.0 110 64.5
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.9e-31 139.0 110 66.4
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 1.9e-31 139.0 110 66.4
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 1.9e-31 139.0 110 66.4
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.9e-31 139.0 110 66.4
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.5e-31 138.7 109 66.1
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 9.7e-31 136.7 114 61.4
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.7e-31 136.7 114 63.2
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 9.7e-31 136.7 110 65.5
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 9.7e-31 136.7 110 65.5
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 9.7e-31 136.7 110 65.5
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.3e-30 136.3 113 61.9
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.8e-30 134.4 114 60.5
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 2.0e-28 129.0 100 66.0
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 3.4e-28 128.3 114 57.9
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.9e-28 127.5 99 67.7
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 1.0e-27 126.7 99 65.7
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 1.0e-27 126.7 110 57.3
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 1.3e-27 126.3 102 64.7
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.3e-27 126.3 114 57.0
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 1.7e-27 125.9 114 54.4
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 1.7e-27 125.9 114 54.4
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.5e-27 123.6 100 64.0
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.4e-26 122.9 114 58.8
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.4e-26 122.9 101 65.3
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 3.2e-26 121.7 114 50.0
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 7.2e-26 120.6 99 62.6
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 7.2e-26 120.6 109 57.8
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 4.6e-25 117.9 110 54.5
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.0e-24 115.2 90 66.7
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 3.9e-24 114.8 95 64.2
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 5.1e-24 114.4 110 52.7
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 8.8e-24 113.6 95 61.1
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 8.8e-24 113.6 101 58.4
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.5e-23 112.8 95 62.1
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 7.4e-23 110.5 94 59.6
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.8e-22 108.6 95 60.0
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.8e-22 107.8 89 64.0
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 6.9e-21 104.0 87 63.2
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 9.1e-21 103.6 100 53.0
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.0e-20 102.4 110 50.0
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 2.0e-20 102.4 110 50.0
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.0e-20 102.4 110 50.0
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.0e-20 102.4 110 50.0
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.0e-20 102.4 110 50.0
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.0e-20 102.4 110 50.0
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 3.4e-20 101.7 110 49.1
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 7.7e-20 100.5 110 49.1
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.7e-19 99.4 110 48.2
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 8.5e-19 97.1 59 76.3
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 8.5e-19 97.1 59 76.3
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 8.5e-19 97.1 63 71.4
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 1.1e-18 96.7 62 71.0
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 1.4e-18 96.3 63 71.4
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 1.9e-18 95.9 110 47.3
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 2.5e-18 95.5 63 68.3
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 2.5e-18 95.5 63 68.3
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 5.5e-18 94.4 80 60.0
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-17 93.2 63 69.8
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-17 92.8 63 69.8
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 6.1e-17 90.9 76 61.8
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 5.1e-16 87.8 105 47.6
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.5e-15 86.3 76 57.9
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.6e-15 85.5 74 60.8
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 2.6e-15 85.5 120 43.3
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.4e-15 84.7 63 61.9
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.7e-15 84.3 95 47.4
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 7.4e-15 84.0 94 48.9
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 2.8e-14 82.0 75 57.3
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-13 80.1 68 63.2
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 1.2e-12 76.6 49 69.4
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.6e-12 75.5 71 57.7
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 4.5e-12 74.7 70 57.1
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 1.7e-11 72.8 49 67.3
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 2.9e-11 72.0 68 54.4
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 5.0e-11 71.2 87 47.1
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.0e-11 71.2 71 54.9
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 7.2e-10 67.4 65 53.8
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 7.2e-10 67.4 65 53.8
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 7.2e-10 67.4 65 53.8
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 7.2e-10 67.4 65 53.8
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 7.2e-10 67.4 65 53.8
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 9.4e-10 67.0 63 54.0
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 4.7e-09 64.7 63 57.1
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 8.0e-09 63.9 60 58.3
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 8.0e-09 63.9 53 62.3
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 8.0e-09 63.9 69 49.3
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.4e-08 63.2 76 48.7
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 4.0e-08 61.6 44 65.9
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.1e-07 60.1 46 65.2
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 3.3e-07 58.5 72 43.1
Hund18006 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-06 56.6 64 50.0
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.7e-06 56.2 70 44.3
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.7e-06 56.2 70 44.3
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 2.8e-06 55.5 91 37.4
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 8.2e-06 53.9 36 69.4
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 8.2e-06 53.9 36 69.4


User provided reference genes

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