Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 0.0e+00 1341.6 681 100.0
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 2.9e-256 888.6 726 66.3
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 7.0e-242 840.9 773 62.5
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.9e-232 808.5 729 63.4
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.3e-227 793.5 754 60.7
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 6.4e-219 764.6 697 61.4
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 7.8e-217 757.7 697 59.1
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 5.1e-216 755.0 692 60.0
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 4.3e-215 751.9 734 57.5
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 5.2e-213 745.0 709 59.8
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 8.9e-213 744.2 693 59.6
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.4e-212 742.3 701 60.3
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 2.2e-211 739.6 752 55.7
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 2.9e-211 739.2 733 58.1
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 4.9e-211 738.4 689 59.4
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 2.4e-210 736.1 697 58.4
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 2.1e-209 733.0 701 58.2
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 2.3e-208 729.6 691 58.9
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 5.1e-208 728.4 750 55.2
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 6.6e-208 728.0 689 58.9
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 6.6e-208 728.0 740 56.1
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.9e-207 726.5 737 55.9
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 3.3e-207 725.7 756 56.0
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 1.6e-206 723.4 735 56.6
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 2.4e-205 719.5 736 56.4
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 3.1e-205 719.2 735 57.3
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 3.1e-205 719.2 576 67.5
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 6.8e-205 718.0 732 55.5
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 8.9e-205 717.6 688 58.6
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.5e-204 716.8 681 58.9
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 3.8e-203 712.2 741 55.1
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.1e-202 710.7 694 57.5
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.9e-202 709.9 700 57.3
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.9e-202 709.9 686 57.3
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 3.2e-202 709.1 740 55.3
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 7.1e-202 708.0 706 58.2
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 9.3e-202 707.6 755 54.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.5e-201 705.7 698 57.2
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 4.6e-201 705.3 733 55.7
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 4.6e-201 705.3 709 55.4
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 6.0e-201 704.9 732 54.5
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.0e-200 704.1 706 57.9
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.0e-200 702.6 683 58.1
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 6.6e-200 701.4 695 56.4
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.5e-199 700.3 727 55.7
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.3e-198 697.2 685 58.8
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 2.1e-198 696.4 762 53.1
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 6.9e-197 691.4 714 56.0
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 4.4e-196 688.7 692 56.9
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 3.8e-195 685.6 699 55.7
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 8.4e-195 684.5 678 56.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 5.4e-194 681.8 722 54.6
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 9.3e-194 681.0 724 54.8
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 1.2e-193 680.6 701 55.8
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.7e-192 676.8 740 53.4
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 3.0e-192 676.0 653 57.9
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 3.0e-192 676.0 704 54.4
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 5.1e-192 675.2 693 56.0
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.5e-191 673.7 682 56.2
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 4.8e-190 668.7 717 54.3
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 5.3e-189 665.2 700 54.7
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.5e-188 663.7 698 55.6
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.0e-188 663.3 734 53.0
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 6.4e-187 658.3 710 53.1
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 3.2e-186 656.0 692 55.2
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 9.3e-186 654.4 692 55.3
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.3e-184 650.6 700 53.7
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 7.4e-183 644.8 610 57.7
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 2.1e-182 643.3 532 63.2
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 9.0e-181 637.9 588 58.3
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.2e-180 637.5 785 48.7
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.7e-179 633.6 658 55.8
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.7e-179 633.6 719 53.5
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 2.2e-179 633.3 702 52.3
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 9.3e-178 627.9 521 63.7
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 5.7e-175 618.6 589 58.7
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 4.8e-174 615.5 630 55.2
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.5e-169 599.4 564 58.3
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 6.7e-168 595.1 495 64.8
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.4e-164 582.8 678 51.6
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 2.5e-162 576.6 441 67.3
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 6.9e-157 558.5 729 48.0
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 4.2e-154 549.3 676 48.7
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 9.1e-149 531.6 714 43.6
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 6.1e-145 518.8 566 53.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 3.3e-143 513.1 725 45.9
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 2.6e-135 486.9 391 64.5
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 5.7e-135 485.7 716 41.8
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 8.3e-126 455.3 714 41.5
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.2e-124 451.4 340 68.8
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.0e-123 446.0 451 55.4
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 1.9e-122 444.1 338 68.3
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 1.2e-116 424.9 481 54.1
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 2.3e-115 420.6 757 39.6
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-113 414.8 388 58.8
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.7e-113 412.9 388 58.5
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 1.7e-110 404.4 412 52.7
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.9e-110 403.7 388 57.5
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.5e-100 370.2 354 55.9
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.3e-96 357.5 650 41.1
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.2e-92 345.1 314 60.2
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 5.8e-87 326.2 748 34.6
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.3e-86 325.1 851 32.2
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.1e-77 295.4 340 49.1
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.2e-77 293.9 365 47.7
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 7.9e-68 262.7 311 50.8
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.9e-66 258.1 242 60.3
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 2.0e-63 248.1 735 31.6
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.0e-62 245.7 193 64.8
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.1e-61 242.3 240 55.0
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 3.3e-58 230.7 162 69.8
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 6.5e-54 216.5 163 65.6
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.0e-51 207.6 314 42.7
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.8e-48 198.4 183 59.0
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.0e-46 192.6 162 60.5
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 6.1e-44 183.3 166 59.0
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.7e-41 175.3 250 47.2
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.1e-36 158.3 265 41.1
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.0e-34 151.8 648 26.5
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 9.4e-29 132.9 200 46.5
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 4.4e-26 124.0 130 52.3
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 4.2e-21 107.5 139 44.6
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 8.3e-17 93.2 124 50.8
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 4.5e-15 87.4 56 73.2
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.9e-14 84.7 125 46.4
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.2e-12 79.3 113 46.9
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 3.6e-12 77.8 125 47.2
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 4.7e-12 77.4 123 40.7
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.7e-09 67.8 35 97.1
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.4e-08 65.1 145 37.2
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 9.2e-08 63.2 105 42.9


User provided reference genes

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