Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06206 Selenicereus undatus HOM05D004625 ORTHO05D006054 0.0e+00 2540.8 1338 100.0
AUR62016661 Chenopodium quinoa HOM05D004625 ORTHO05D006054 0.0e+00 1623.6 1300 67.8
AUR62011397 Chenopodium quinoa HOM05D004625 ORTHO05D006054 0.0e+00 1622.1 1300 67.5
EL10Ac9g21791 Beta vulgaris HOM05D004625 ORTHO05D006054 0.0e+00 1610.5 1301 67.9
Ah.01g019860 Amaranthus hybridus HOM05D004625 ORTHO05D006054 0.0e+00 1563.9 1304 65.4
Sc14g0001720 Simmondsia chinensis HOM05D004625 ORTHO05D006054 0.0e+00 1503.8 1305 62.5
Dinv42107 Davidia involucrata HOM05D004625 ORTHO05D006054 0.0e+00 1360.5 1314 57.8
QL11p039255 Quercus lobata HOM05D004625 ORTHO05D006054 0.0e+00 1318.5 1320 56.6
Gohir.D01G172900 Gossypium hirsutum HOM05D004625 ORTHO05D006054 0.0e+00 1315.4 1316 55.9
TAR381G1538 Trochodendron aralioides HOM05D004625 ORTHO05D006054 0.0e+00 1309.7 1300 56.6
Cfa004948 Carpinus fangiana HOM05D004625 ORTHO05D006054 0.0e+00 1308.9 1309 56.0
Prupe.8G112500 Prunus persica HOM05D004625 ORTHO05D006054 0.0e+00 1307.7 1317 55.4
Thecc.02G028700 Theobroma cacao HOM05D004625 ORTHO05D006054 0.0e+00 1302.7 1319 55.9
Ciclev10027657m.g Citrus clementina HOM05D004625 ORTHO05D006054 0.0e+00 1297.0 1310 55.6
Duzib052G1066 Durio zibethinus HOM05D004625 ORTHO05D006054 0.0e+00 1292.7 1312 55.6
Actinidia27924 Actinidia chinensis HOM05D004625 ORTHO05D006054 0.0e+00 1289.6 1304 55.4
Manes.15G145800 Manihot esculenta HOM05D004625 ORTHO05D006054 0.0e+00 1284.2 1308 56.0
Gorai.002G214500 Gossypium raimondii HOM05D004625 ORTHO05D006054 0.0e+00 1279.6 1318 55.2
CiPaw.05G058800 Carya illinoinensis HOM05D004625 ORTHO05D006054 0.0e+00 1278.1 1312 54.8
Atru.chr5.2894 Acer truncatum HOM05D004625 ORTHO05D006054 0.0e+00 1274.2 1322 55.3
Hma1.2p1_1353F.1_g277680 Hydrangea macrophylla HOM05D004625 ORTHO05D006054 0.0e+00 1272.7 1309 54.9
Potri.004G147800 Populus trichocarpa HOM05D004625 ORTHO05D006054 0.0e+00 1269.6 1310 55.1
Rhsim05G0078500 Rhododendron simsii HOM05D004625 ORTHO05D006054 0.0e+00 1269.6 1295 54.4
Glyma.11G123500 Glycine max HOM05D004625 ORTHO05D006054 0.0e+00 1265.4 1312 53.7
Sabra04G0098100 Salix brachista HOM05D004625 ORTHO05D006054 0.0e+00 1265.4 1312 55.4
vmacro19476 Vaccinium macrocarpon HOM05D004625 ORTHO05D006054 0.0e+00 1263.8 1320 54.2
MD10G1086500 Malus domestica HOM05D004625 ORTHO05D006054 0.0e+00 1263.4 1320 53.3
Nn5g29411 Nelumbo nucifera HOM05D004625 ORTHO05D006054 0.0e+00 1261.1 1309 54.2
Gohir.A01G181800 Gossypium hirsutum HOM05D004625 ORTHO05D006054 0.0e+00 1246.1 1309 55.0
FvH4_2g07370 Fragaria vesca HOM05D004625 ORTHO05D006054 0.0e+00 1245.7 1314 53.4
FAN24G2498 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1245.7 1315 53.5
RcHm_v2.0_Chr6g0260791 Rosa chinensis HOM05D004625 ORTHO05D006054 0.0e+00 1245.0 1320 53.3
CANSAT25G0492 Cannabis sativa HOM05D004625 ORTHO05D006054 0.0e+00 1243.8 1318 54.2
Lj5A204T93 Lonicera japonica HOM05D004625 ORTHO05D006054 0.0e+00 1239.2 1154 57.9
COL.COLO4_17776 Corchorus olitorius HOM05D004625 ORTHO05D006054 0.0e+00 1237.2 1282 55.6
FAN20G2900 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1236.1 1301 53.4
arahy.Tifrunner.gnm1.ann1.5EIT1K Arachis hypogaea HOM05D004625 ORTHO05D006054 0.0e+00 1235.3 1326 52.6
FAN27G0869 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1234.2 1314 53.0
Phvul.011G050300 Phaseolus vulgaris HOM05D004625 ORTHO05D006054 0.0e+00 1234.2 1303 53.1
FAN15G2126 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1233.8 1314 53.0
Lalb_Chr19g0138511 Lupinus albus HOM05D004625 ORTHO05D006054 0.0e+00 1231.9 1296 53.3
Psat7g207400 Pisum sativum HOM05D004625 ORTHO05D006054 0.0e+00 1227.2 1325 51.7
Medtr4g068580 Medicago truncatula HOM05D004625 ORTHO05D006054 0.0e+00 1226.5 1324 51.7
Lj3g0006928 Lotus japonicus HOM05D004625 ORTHO05D006054 0.0e+00 1226.1 1327 52.0
GSVIVG01031879001 Vitis vinifera HOM05D004625 ORTHO05D006054 0.0e+00 1220.7 1308 54.8
Aqoxy6G00945 Aquilegia oxysepala HOM05D004625 ORTHO05D006054 0.0e+00 1215.3 1314 54.0
TPR.G10228 Trifolium pratense HOM05D004625 ORTHO05D006054 0.0e+00 1206.4 1328 51.4
TWI75G0995 Tripterygium wilfordii HOM05D004625 ORTHO05D006054 0.0e+00 1204.9 1319 52.3
MBI16_g13376_MAGBIO Magnolia biondii HOM05D004625 ORTHO05D006054 0.0e+00 1203.3 1309 52.5
Peaxi162Scf00016g01337 Petunia axillaris HOM05D004625 ORTHO05D006054 0.0e+00 1180.6 1312 51.6
Ca_20818_v3 Cicer arietinum L. HOM05D004625 ORTHO05D006054 0.0e+00 1166.4 1324 50.6
ECA240G0059 Erigeron canadensis HOM05D004625 ORTHO05D006054 0.0e+00 1164.1 1302 50.6
Lsat_1_v5_gn_9_109140 Lactuca sativa HOM05D004625 ORTHO05D006054 0.0e+00 1149.4 1294 50.9
Migut.B00290 Erythranthe guttata HOM05D004625 ORTHO05D006054 0.0e+00 1139.4 1295 49.9
CsaV3_2G014290 Cucumis sativus L. HOM05D004625 ORTHO05D006054 0.0e+00 1136.3 1322 50.5
SalBow6G1518 Salvia bowleyana HOM05D004625 ORTHO05D006054 0.0e+00 1132.5 1293 50.0
PSO541G5018 Papaver somniferum HOM05D004625 ORTHO05D006054 0.0e+00 1131.7 1311 49.1
ClCG09G017690 Citrullus lanatus HOM05D004625 ORTHO05D006054 0.0e+00 1124.8 1347 49.5
SGA_v2.0_scaffold58G20593 Striga asiatica HOM05D004625 ORTHO05D006054 0.0e+00 1120.1 1295 49.6
MELO3C021931.2 Cucumis melo HOM05D004625 ORTHO05D006054 0.0e+00 1119.4 1361 49.4
HanXRQChr03g0074341 Helianthus annuus HOM05D004625 ORTHO05D006054 0.0e+00 1112.4 1297 49.6
Sed0024635 Sechium edule HOM05D004625 ORTHO05D006054 0.0e+00 1109.0 1304 49.8
Solyc01g109080.3 Solanum lycopersicum HOM05D004625 ORTHO05D006054 0.0e+00 1091.6 1306 47.9
Cc02_g18180 Coffea canephora HOM05D004625 ORTHO05D006054 0.0e+00 1090.9 1292 49.5
Sopen01g051280 Solanum pennellii HOM05D004625 ORTHO05D006054 0.0e+00 1089.7 1308 47.7
THA.LOC104807342 Tarenaya hassleriana HOM05D004625 ORTHO05D006054 0.0e+00 1088.9 1312 49.6
Nitab4.5_0009399g0010 Nicotiana tabacum HOM05D004625 ORTHO05D006054 0.0e+00 1079.3 1135 52.4
Haze_02461 Corylus avellana HOM05D004625 ORTHO05D006054 4.6e-311 1071.6 940 59.8
Haze_02463 Corylus avellana HOM05D004625 ORTHO05D006054 3.1e-310 1068.9 949 59.6
Nitab4.5_0004946g0030 Nicotiana tabacum HOM05D004625 ORTHO05D006054 3.0e-305 1052.4 1389 45.4
PGR142G2954 Punica granatum HOM05D004625 ORTHO05D006054 3.7e-303 1045.4 1306 47.3
AL3G47770 Arabidopsis lyrata HOM05D004625 ORTHO05D006054 1.5e-301 1040.0 1300 46.9
DCAR_003629 Daucus carota HOM05D004625 ORTHO05D006054 1.3e-300 1036.9 1296 48.2
CARHR106270 Cardamine hirsuta HOM05D004625 ORTHO05D006054 5.0e-300 1035.0 1300 46.8
Eucgr.I01219 Eucalyptus grandis HOM05D004625 ORTHO05D006054 8.8e-289 997.7 1305 46.3
Aa31LG8G13470 Aethionema arabicum HOM05D004625 ORTHO05D006054 7.4e-288 994.6 1216 48.8
ATR0733G016 Amborella trichopoda HOM05D004625 ORTHO05D006054 3.1e-286 989.2 1321 45.9
BcaC06g36102 Brassica carinata HOM05D004625 ORTHO05D006054 2.3e-265 919.8 1044 49.9
C07p07830 Brassica napus HOM05D004625 ORTHO05D006054 2.3e-265 919.8 1044 49.9
BolC7t41201H Brassica oleracea HOM05D004625 ORTHO05D006054 2.3e-265 919.8 1044 49.9
A07p04860 Brassica napus HOM05D004625 ORTHO05D006054 1.5e-264 917.1 1050 49.5
BraA07t28278Z Brassica rapa HOM05D004625 ORTHO05D006054 3.7e-263 912.5 1050 49.4
Thhalv10022517m.g Eutrema salsugineum HOM05D004625 ORTHO05D006054 1.4e-262 910.6 1051 49.1
Sp3g29240 Schrenkiella parvula HOM05D004625 ORTHO05D006054 2.0e-261 906.7 1050 49.0
Zm00001eb056540 Zea mays HOM05D004625 ORTHO05D006054 2.3e-249 866.7 1160 44.2
BcaNung07055 Brassica carinata HOM05D004625 ORTHO05D006054 9.5e-243 844.7 967 48.7
Oeu035506.5 Olea europaea HOM05D004625 ORTHO05D006054 2.6e-232 810.1 888 53.5
HPP92_012816 Vanilla planifolia HOM05D004625 ORTHO05D006054 1.1e-209 734.9 1180 40.2
SEGI_16426 Sequoiadendron giganteum HOM05D004625 ORTHO05D006054 1.7e-191 674.5 934 43.8
Mapoly0101s0045 Marchantia polymorpha HOM05D004625 ORTHO05D006054 1.0e-183 648.7 1334 34.9
unitig_0.g75 Utricularia gibba HOM05D004625 ORTHO05D006054 7.4e-179 632.5 1299 34.4
AagrBONN_evm.TU.Sc2ySwM_362.351 Anthoceros agrestis HOM05D004625 ORTHO05D006054 7.0e-177 625.9 1317 34.0
SMO340G0206 Selaginella moellendorffii HOM05D004625 ORTHO05D006054 8.0e-149 532.7 1058 34.7
arahy.Tifrunner.gnm1.ann1.33V1D5 Arachis hypogaea HOM05D004625 ORTHO05D006054 5.4e-137 493.4 462 56.9
CDE02G1698 Ceratophyllum demersum HOM05D004625 ORTHO05D006054 1.6e-125 455.3 755 39.2
Pp3c10_4250 Physcomitrium patens HOM05D004625 ORTHO05D006054 2.4e-97 361.7 1331 27.0
Ca_20819_v3 Cicer arietinum L. HOM05D004625 ORTHO05D006054 1.3e-82 312.8 262 59.2
vmacro20401 Vaccinium macrocarpon HOM05D001484 ORTHO05D001564 5.5e-73 280.8 305 50.8
Cpa.g.sc62.84 Carica papaya HOM05D004625 ORTHO05D006054 4.2e-65 254.6 372 45.7
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 2.0e-62 245.7 225 55.1
RcHm_v2.0_Chr6g0260201 Rosa chinensis HOM05D004625 ORTHO05D006054 3.0e-55 221.9 192 60.4
RcHm_v2.0_Chr6g0260701 Rosa chinensis HOM05D004625 ORTHO05D006054 1.2e-51 209.9 205 56.6
HPP92_012733 Vanilla planifolia HOM05D004625 ORTHO05D006054 1.4e-36 159.8 316 32.9
CANSAT01G2998 Cannabis sativa HOM05D004625 ORTHO05D006054 1.2e-35 156.8 179 53.6
CANSAT21G0857 Cannabis sativa HOM05D004625 ORTHO05D006054 1.0e-34 153.7 310 41.6
HPP92_012732 Vanilla planifolia HOM05D004625 ORTHO05D006054 2.9e-29 135.6 362 30.7
RcHm_v2.0_Chr6g0260221 Rosa chinensis HOM05D004625 ORTHO05D006054 3.2e-28 132.1 136 56.6
GSVIVG01000374001 Vitis vinifera HOM05D004625 ORTHO05D006054 1.1e-23 117.1 103 59.2
Medtr8g465860 Medicago truncatula HOM05D004625 ORTHO05D006054 1.4e-23 116.7 109 46.8
SEGI_40710 Sequoiadendron giganteum HOM05D004625 ORTHO05D006054 6.8e-23 114.4 392 29.3
GSVIVG01014971001 Vitis vinifera HOM05D001656 ORTHO05D003489 7.3e-17 94.4 136 44.9
SEGI_32895 Sequoiadendron giganteum HOM05D004625 ORTHO05D006054 1.9e-12 79.7 105 47.6
RcHm_v2.0_Chr6g0259991 Rosa chinensis HOM05D004625 ORTHO05D006054 9.2e-12 77.4 53 67.9
CAN.G1015.3 Capsicum annuum HOM05D004625 ORTHO05D006054 2.1e-08 66.2 76 44.7
RcHm_v2.0_Chr6g0260261 Rosa chinensis HOM05D004625 ORTHO05D006054 1.5e-06 60.1 51 66.7


User provided reference genes

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