Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 0.0e+00 1272.7 655 100.0
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.2e-234 814.7 656 67.5
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.8e-231 806.2 656 67.5
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 2.9e-229 798.9 656 66.8
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 5.0e-229 798.1 641 67.7
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.5e-228 794.7 656 66.3
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 5.5e-228 794.7 657 66.2
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.6e-227 793.1 658 66.7
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 5.7e-225 784.6 660 66.7
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.7e-224 781.9 656 66.2
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 8.3e-224 780.8 667 64.5
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.1e-223 780.4 662 65.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.4e-223 780.0 656 65.9
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.1e-223 778.9 674 64.2
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 4.5e-222 775.0 657 66.5
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 4.5e-222 775.0 659 65.3
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.0e-221 773.9 656 65.4
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.3e-221 772.7 655 64.0
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.3e-220 768.8 599 68.3
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.6e-219 766.5 658 64.1
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.4e-218 763.5 658 64.7
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.2e-218 761.5 657 64.5
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 7.5e-217 757.7 660 64.1
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 3.7e-216 755.4 657 63.6
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 3.2e-215 752.3 671 63.3
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 9.2e-215 750.7 642 65.3
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.6e-214 750.0 657 64.5
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.5e-214 748.8 656 64.2
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.9e-212 743.0 661 64.1
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.3e-212 741.1 686 61.7
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.2e-211 740.3 656 62.5
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.7e-211 738.4 659 62.8
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.8e-210 736.5 659 62.4
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 8.9e-210 734.2 655 62.1
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.3e-208 730.3 649 62.4
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.9e-208 729.2 653 62.2
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 8.3e-208 727.6 656 61.6
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.9e-207 726.5 659 63.3
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.7e-206 722.6 659 61.8
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 3.5e-206 722.2 656 62.5
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 6.0e-206 721.5 657 62.9
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 7.8e-206 721.1 658 62.9
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 7.8e-206 721.1 669 62.0
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 2.3e-205 719.5 657 61.6
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.5e-204 716.8 657 61.6
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 2.5e-204 716.1 658 60.6
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.6e-204 714.9 658 60.5
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.6e-203 712.2 659 61.3
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 3.6e-203 712.2 659 61.9
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 4.0e-202 708.8 655 61.4
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 6.8e-202 708.0 661 61.0
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 6.8e-202 708.0 654 60.9
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.4e-201 705.7 661 61.7
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 5.8e-201 704.9 637 61.4
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 4.9e-200 701.8 659 59.8
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 4.9e-200 701.8 668 60.5
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 8.3e-200 701.0 716 58.0
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.1e-199 700.7 660 60.5
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 1.4e-199 700.3 679 58.9
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.9e-199 699.9 658 59.0
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 9.2e-199 697.6 655 59.5
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 9.2e-199 697.6 659 60.1
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-198 697.2 659 60.1
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.1e-198 696.4 684 61.1
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 6.0e-198 694.9 663 59.7
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.9e-197 692.2 655 59.4
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-196 689.9 659 59.3
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 6.2e-195 684.9 656 59.3
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 6.8e-194 681.4 594 65.0
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 6.8e-194 681.4 657 59.1
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.9e-194 681.0 685 57.4
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.5e-193 680.2 673 58.5
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.5e-193 680.2 664 58.9
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 4.9e-192 675.2 657 59.4
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 2.1e-190 669.8 655 58.8
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 6.0e-190 668.3 694 56.6
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 3.0e-189 666.0 656 57.6
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.5e-188 662.9 655 57.6
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 5.6e-188 661.8 655 57.6
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 9.6e-188 661.0 676 58.6
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.4e-186 657.1 655 57.3
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.2e-185 654.1 665 58.9
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.2e-185 654.1 658 58.2
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.4e-185 652.5 654 57.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 9.9e-185 651.0 658 57.6
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 2.4e-183 646.4 656 56.6
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.3e-181 640.6 563 62.3
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 6.6e-181 638.3 644 56.2
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.5e-180 636.3 626 58.1
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.1e-179 633.3 663 57.2
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-178 630.9 595 60.0
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.8e-178 630.2 597 58.5
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.1e-178 629.4 657 56.2
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 4.0e-178 629.0 529 65.4
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.7e-176 623.6 659 55.7
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 4.9e-176 622.1 595 57.8
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 4.2e-175 619.0 665 55.6
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 4.9e-168 595.5 552 60.5
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 5.5e-167 592.0 659 53.9
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 7.1e-167 591.7 583 58.7
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 5.1e-165 585.5 658 54.1
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 7.1e-159 565.1 595 54.8
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 4.8e-147 525.8 628 51.4
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 8.2e-147 525.0 429 65.0
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 9.4e-143 511.5 550 53.5
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 1.8e-138 497.3 376 69.9
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 3.1e-138 496.5 653 48.5
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.1e-135 488.0 377 68.7
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 8.8e-133 478.4 656 48.3
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.7e-131 474.2 360 68.6
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-126 458.0 531 51.4
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.1e-126 455.7 466 55.8
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.0e-125 454.9 374 63.6
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 3.1e-122 443.4 589 46.7
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 7.0e-122 442.2 552 49.3
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.3e-117 427.2 433 58.4
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.6e-105 387.9 678 39.7
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-101 374.4 425 50.6
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 4.9e-91 339.7 506 42.9
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-89 334.3 296 65.5
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.1e-87 328.6 281 63.7
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.4e-84 317.0 408 48.8
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 2.9e-83 313.9 202 81.2
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 3.6e-78 297.0 682 35.0
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.0e-77 293.5 351 50.7
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-76 290.8 375 46.1
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.1e-73 281.2 262 59.2
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 4.7e-70 270.0 223 59.6
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.0e-68 264.6 276 55.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 3.9e-64 250.4 276 53.6
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.3e-62 245.4 269 53.2
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-58 231.1 271 50.2
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 4.2e-58 230.3 282 52.1
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.4e-58 229.9 252 54.8
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.3e-56 224.6 273 49.8
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 5.6e-55 219.9 757 29.6
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.5e-52 211.8 276 47.8
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 8.4e-51 206.1 277 49.5
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.2e-50 203.8 252 49.6
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 2.4e-45 188.0 276 44.2
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-43 182.2 291 44.3
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.3e-43 182.2 112 83.0
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.5e-42 177.9 155 65.8
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.5e-39 167.9 277 39.7
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 8.2e-38 162.9 116 70.7
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-35 155.6 210 48.6
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.6e-33 148.7 237 40.5
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.0e-32 146.0 151 53.6
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-31 142.1 168 50.0
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.9e-31 141.7 167 51.5
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.1e-29 134.4 81 87.7
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 4.1e-29 134.0 87 83.9
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 6.9e-29 133.3 81 87.7
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.5e-28 132.1 240 37.1
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.5e-28 132.1 145 55.2
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.7e-27 128.6 126 60.3
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 8.5e-27 126.3 100 65.0
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 7.2e-26 123.2 313 35.5
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 2.2e-22 111.7 113 55.8
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.3e-22 110.2 166 44.0
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.1e-21 107.5 420 27.1
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 4.1e-21 107.5 141 47.5
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 5.3e-21 107.1 106 47.2
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.0e-19 102.8 244 32.0
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.2e-18 97.8 186 34.4
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 9.7e-15 86.3 77 57.1
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 9.1e-13 79.7 153 37.3
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-11 75.9 86 50.0
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.5e-10 72.4 113 42.5
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.0e-08 64.3 40 67.5
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.5e-07 62.4 64 56.2
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.5e-07 62.4 64 56.2
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 5.7e-07 60.5 70 47.1
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.2e-06 58.5 74 45.9
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 3.7e-06 57.8 144 38.9
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.8e-06 57.4 72 47.2
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.8e-06 57.4 72 47.2


User provided reference genes

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