Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03520 Selenicereus undatus HOM05D000949 ORTHO05D379471 2.6e-79 298.5 138 100.0
Hund03142 Selenicereus undatus HOM05D000949 ORTHO05D009565 9.8e-34 147.1 104 67.3
AUR62005731 Chenopodium quinoa HOM05D000949 ORTHO05D009565 6.1e-28 127.9 96 58.3
AUR62028830 Chenopodium quinoa HOM05D000949 ORTHO05D009565 6.1e-28 127.9 96 59.4
Sc13g0007150 Simmondsia chinensis HOM05D000949 ORTHO05D009565 1.8e-27 126.3 90 61.1
EL10Ac3g05543 Beta vulgaris HOM05D000949 ORTHO05D009565 3.4e-26 122.1 129 47.3
Hund11989 Selenicereus undatus HOM05D000949 ORTHO05D009565 4.4e-26 121.7 94 58.5
TAR362G0920 Trochodendron aralioides HOM05D000949 ORTHO05D009565 2.9e-25 119.0 102 53.9
AUR62032782 Chenopodium quinoa HOM05D000949 ORTHO05D009565 3.7e-25 118.6 100 52.0
AUR62016239 Chenopodium quinoa HOM05D000949 ORTHO05D009565 1.4e-24 116.7 95 53.7
TAR365G1047 Trochodendron aralioides HOM05D000949 ORTHO05D009565 1.2e-23 113.6 95 52.6
EL10Ac3g05918 Beta vulgaris HOM05D000949 ORTHO05D009565 1.6e-23 113.2 92 56.5
PGSC0003DMG400004615 Solanum tuberosum HOM05D000949 ORTHO05D009565 5.9e-23 111.3 97 51.5
Solyc12g099180.3 Solanum lycopersicum HOM05D000949 ORTHO05D009565 1.0e-22 110.5 97 51.5
Sopen12g033860 Solanum pennellii HOM05D000949 ORTHO05D009565 1.0e-22 110.5 97 51.5
Nn3g21781 Nelumbo nucifera HOM05D000949 ORTHO05D009565 1.7e-22 109.8 97 51.5
Ah.07g201600 Amaranthus hybridus HOM05D000949 ORTHO05D009565 2.3e-22 109.4 96 51.0
Cfa015282 Carpinus fangiana HOM05D000949 ORTHO05D009565 2.3e-22 109.4 97 51.5
CiPaw.01G135500 Carya illinoinensis HOM05D000949 ORTHO05D009565 2.9e-22 109.0 97 51.5
Potri.008G102500 Populus trichocarpa HOM05D000949 ORTHO05D009565 2.9e-22 109.0 95 48.4
Haze_01335 Corylus avellana HOM05D000949 ORTHO05D009565 3.9e-22 108.6 97 50.5
Haze_01340 Corylus avellana HOM05D000949 ORTHO05D009565 3.9e-22 108.6 97 50.5
Lj6g0003299 Lotus japonicus HOM05D000949 ORTHO05D009565 5.0e-22 108.2 97 50.5
Peaxi162Scf01160g00149 Petunia axillaris HOM05D000949 ORTHO05D009565 5.0e-22 108.2 97 52.6
CAN.G484.70 Capsicum annuum HOM05D000949 ORTHO05D009565 6.6e-22 107.8 97 52.6
Manes.03G207200 Manihot esculenta HOM05D000949 ORTHO05D009565 8.6e-22 107.5 95 49.5
TWI09G0276 Tripterygium wilfordii HOM05D000949 ORTHO05D009565 8.6e-22 107.5 95 51.6
Ca_17170_v3 Cicer arietinum L. HOM05D000949 ORTHO05D009565 1.9e-21 106.3 97 50.5
Nitab4.5_0002294g0110 Nicotiana tabacum HOM05D000949 ORTHO05D009565 3.3e-21 105.5 97 51.5
TAR383G0050 Trochodendron aralioides HOM05D000949 ORTHO05D009565 3.3e-21 105.5 97 51.5
MBI19_g03269_MAGBIO Magnolia biondii HOM05D000949 ORTHO05D009565 4.3e-21 105.1 97 48.5
arahy.Tifrunner.gnm1.ann1.UM9WQL Arachis hypogaea HOM05D000949 ORTHO05D009565 7.3e-21 104.4 95 48.4
Thecc.04G305100 Theobroma cacao HOM05D000949 ORTHO05D009565 7.3e-21 104.4 95 49.5
Hma1.2p1_0013F.1_g008290 Hydrangea macrophylla HOM05D000949 ORTHO05D009565 9.5e-21 104.0 95 52.6
Dinv44261 Davidia involucrata HOM05D000949 ORTHO05D009565 1.2e-20 103.6 97 51.5
Gorai.005G068500 Gossypium raimondii HOM05D000949 ORTHO05D009565 1.2e-20 103.6 95 50.5
CSS0042580 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D009565 1.6e-20 103.2 97 50.5
QL06p012857 Quercus lobata HOM05D000949 ORTHO05D009565 1.6e-20 103.2 97 49.5
GSVIVG01034960001 Vitis vinifera HOM05D000949 ORTHO05D009565 2.1e-20 102.8 95 52.6
PGSC0003DMG400029059 Solanum tuberosum HOM05D000949 ORTHO05D009565 3.6e-20 102.1 97 48.5
Peaxi162Scf00228g00621 Petunia axillaris HOM05D000949 ORTHO05D009565 4.7e-20 101.7 97 49.5
Phvul.006G119900 Phaseolus vulgaris HOM05D000949 ORTHO05D009565 4.7e-20 101.7 97 49.5
arahy.Tifrunner.gnm1.ann1.7IYA67 Arachis hypogaea HOM05D000949 ORTHO05D009565 8.0e-20 100.9 95 47.4
Gohir.D02G060800 Gossypium hirsutum HOM05D000949 ORTHO05D009565 1.0e-19 100.5 95 49.5
Gorai.005G068400 Gossypium raimondii HOM05D000949 ORTHO05D009565 1.0e-19 100.5 95 49.5
Lalb_Chr15g0089121 Lupinus albus HOM05D000949 ORTHO05D009565 1.4e-19 100.1 99 49.5
Ciclev10004938m.g Citrus clementina HOM05D000949 ORTHO05D009565 1.8e-19 99.8 95 46.3
Lalb_Chr20g0120731 Lupinus albus HOM05D000949 ORTHO05D009565 1.8e-19 99.8 97 51.5
Cpa.g.sc9.23 Carica papaya HOM05D000949 ORTHO05D009565 2.3e-19 99.4 94 52.1
Rhsim04G0241500 Rhododendron simsii HOM05D000949 ORTHO05D009565 4.0e-19 98.6 97 47.4
Lj6C694G3 Lonicera japonica HOM05D000949 ORTHO05D009565 5.2e-19 98.2 97 50.5
VMungo0540G1062 Vigna mungo HOM05D000949 ORTHO05D009565 5.2e-19 98.2 97 47.4
vmacro07950 Vaccinium macrocarpon HOM05D000949 ORTHO05D009565 8.9e-19 97.4 102 46.1
Lalb_Chr18g0058591 Lupinus albus HOM05D000949 ORTHO05D009565 1.5e-18 96.7 101 50.5
Solyc01g058260.4 Solanum lycopersicum HOM05D000949 ORTHO05D009565 4.4e-18 95.1 97 46.4
Sopen01g023750 Solanum pennellii HOM05D000949 ORTHO05D009565 4.4e-18 95.1 97 46.4
Actinidia18472 Actinidia chinensis HOM05D000949 ORTHO05D009565 9.8e-18 94.0 97 46.4
PSO357G0461 Papaver somniferum HOM05D000949 ORTHO05D009565 9.8e-18 94.0 95 47.4
COL.COLO4_34576 Corchorus olitorius HOM05D000949 ORTHO05D009565 1.3e-17 93.6 95 45.3
Cc03_g00580 Coffea canephora HOM05D000949 ORTHO05D009565 2.2e-17 92.8 95 46.3
HanXRQChr13g0394751 Helianthus annuus HOM05D000949 ORTHO05D009565 1.1e-16 90.5 95 43.2
MSTRG.10165 Avicennia marina HOM05D000949 ORTHO05D009565 1.4e-16 90.1 95 43.2
PSO170G2901 Papaver somniferum HOM05D000949 ORTHO05D009565 1.4e-16 90.1 95 46.3
Carub.0003s0603 Capsella rubella HOM05D000949 ORTHO05D009565 1.9e-16 89.7 111 41.4
Lsat_1_v5_gn_6_341 Lactuca sativa HOM05D000949 ORTHO05D009565 1.9e-16 89.7 96 44.8
Actinidia04611 Actinidia chinensis HOM05D000949 ORTHO05D009565 3.2e-16 89.0 97 43.3
Actinidia31565 Actinidia chinensis HOM05D000949 ORTHO05D009565 3.2e-16 89.0 97 43.3
C05p60670 Brassica napus HOM05D000949 ORTHO05D009565 4.1e-16 88.6 100 42.0
BolC5t34727H Brassica oleracea HOM05D000949 ORTHO05D009565 4.1e-16 88.6 100 42.0
Atru.chr4.3058 Acer truncatum HOM05D000949 ORTHO05D009565 5.4e-16 88.2 95 42.1
CiPaw.01G135700 Carya illinoinensis HOM05D000949 ORTHO05D009565 9.2e-16 87.4 120 38.3
Gohir.A02G055700 Gossypium hirsutum HOM05D000949 ORTHO05D009565 9.2e-16 87.4 75 52.0
CARHR081110 Cardamine hirsuta HOM05D000949 ORTHO05D009565 4.6e-15 85.1 95 43.2
AL3G17600 Arabidopsis lyrata HOM05D000949 ORTHO05D009565 1.7e-14 83.2 111 40.5
A05p41480 Brassica napus HOM05D000949 ORTHO05D009565 1.7e-14 83.2 100 40.0
BraA05t22868Z Brassica rapa HOM05D000949 ORTHO05D009565 1.7e-14 83.2 100 40.0
Os03g0313300 Oryza sativa ssp. japonica HOM05D000949 ORTHO05D009565 3.9e-14 82.0 102 43.1
Aa31LG5G17110 Aethionema arabicum HOM05D000949 ORTHO05D009565 6.6e-14 81.3 111 37.8
Gohir.D02G060900 Gossypium hirsutum HOM05D000949 ORTHO05D009565 8.6e-14 80.9 94 43.6
Zm00001eb331120 Zea mays HOM05D000949 ORTHO05D009565 2.5e-13 79.3 97 40.2
AT3G06560 Arabidopsis thaliana HOM05D000949 ORTHO05D009565 4.3e-13 78.6 95 41.1
HanXRQChr09g0250471 Helianthus annuus HOM05D000949 ORTHO05D009565 4.3e-13 78.6 99 40.4
Zm00001eb015030 Zea mays HOM05D000949 ORTHO05D009565 4.3e-13 78.6 97 42.3
Zm00001eb395840 Zea mays HOM05D000949 ORTHO05D009565 4.3e-13 78.6 97 42.3
THA.LOC104818875 Tarenaya hassleriana HOM05D000949 ORTHO05D009565 1.2e-12 77.0 111 36.9
Sp3g05500 Schrenkiella parvula HOM05D000949 ORTHO05D009565 1.6e-12 76.6 100 41.0
SEGI_36137 Sequoiadendron giganteum HOM05D000949 ORTHO05D009565 5.2e-11 71.6 94 35.1
Os07g0688500 Oryza sativa ssp. japonica HOM05D000949 ORTHO05D009565 6.8e-11 71.2 103 37.9
ECA246G5275 Erigeron canadensis HOM05D000949 ORTHO05D009565 2.9e-09 65.9 101 38.6
CSS0032086 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D000921 7.8e-07 57.8 67 41.8


User provided reference genes

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