Gene: AT3G06560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G06560
  • Transcript Identifier AT3G06560.1
  • Gene Type Coding gene
  • Location Chr3 : 2044443-2047034 : positive

Gene Family Information

  • ID HOM05D000949
  • #Genes/#Species 633/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G06560.1
  • symbol PAPS3
  • uniprot Q56XM9

Descriptions

  • Description poly(A) polymerase 3
  • Computational description poly(A) polymerase 3 (PAPS3); FUNCTIONS IN: protein binding, polynucleotide adenylyltransferase activity; INVOLVED IN: RNA 3'-end processing, RNA polyadenylation, transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 776 Blast hits to 768 proteins in 219 species: Archae - 0; Bacteria - 13; Metazoa - 255; Fungi - 210; Plants - 173; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031123
IEA
GOA DatabaseRNA 3'-end processing
GO:0031123
IEA
InterProRNA 3'-end processing
GO:0043631
IEA
GOA DatabaseRNA polyadenylation
GO:0043631
IEA
InterProRNA polyadenylation
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006378
IBA
Gene OntologymRNA polyadenylation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0016779
IEA
InterPronucleotidyltransferase activity
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0004652
IEA
GOA Databasepolynucleotide adenylyltransferase activity
GO:0004652
IBA
Gene Ontologypolynucleotide adenylyltransferase activity1
GO:0004652
IEA
InterPropolynucleotide adenylyltransferase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IBA
Gene Ontologynucleus1
GO:0005634
IEA
InterPronucleus
GO:0005737
IDA
Gene Ontologycytoplasm3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR043519 Nucleotidyltransferase superfamily
IPR014492 Poly(A) polymerase
IPR007012 Poly(A) polymerase, central domain
IPR011068 Nucleotidyltransferase, class I-like, C-terminal
Mapman id Description
16.3.1.1.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.poly(A) RNA polymerase activity.poly(A) RNA polymerase