Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 2.9e-88 328.6 167 100.0
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 2.2e-56 222.6 167 73.1
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 4.3e-52 208.4 167 68.9
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 6.5e-48 194.5 167 65.9
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-47 193.7 162 67.3
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 7.1e-47 191.0 167 64.7
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 9.3e-47 190.7 167 64.1
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 9.3e-47 190.7 169 65.1
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.2e-46 190.3 167 64.1
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.6e-46 189.9 166 65.7
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.6e-46 189.9 167 64.1
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.6e-46 189.9 167 64.1
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.6e-46 189.9 167 64.1
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.1e-46 189.5 168 64.9
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.7e-46 189.1 167 62.9
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.7e-46 189.1 167 63.5
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.7e-46 189.1 167 63.5
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.5e-46 188.7 167 62.3
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.5e-46 188.7 167 62.9
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 3.5e-46 188.7 167 64.1
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 6.0e-46 188.0 167 62.3
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 6.0e-46 188.0 167 65.3
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.0e-45 187.2 167 62.3
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.0e-45 187.2 167 62.3
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.3e-45 186.8 167 62.3
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.3e-45 186.8 167 62.9
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 1.8e-45 186.4 167 61.7
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.0e-45 185.7 167 64.1
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 3.0e-45 185.7 159 66.0
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.0e-45 185.7 167 61.7
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 3.9e-45 185.3 167 62.9
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 3.9e-45 185.3 167 61.7
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 3.9e-45 185.3 168 64.9
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 5.1e-45 184.9 164 62.2
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 5.1e-45 184.9 164 62.2
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 5.1e-45 184.9 164 62.2
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 5.1e-45 184.9 167 62.9
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 8.7e-45 184.1 163 63.2
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 1.9e-44 183.0 167 61.1
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.9e-44 183.0 167 62.3
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 5.7e-44 181.4 171 63.2
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.7e-44 181.4 167 62.3
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 5.7e-44 181.4 167 61.1
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.6e-43 179.9 162 62.3
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.6e-43 179.9 159 63.5
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 2.2e-43 179.5 168 60.7
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.2e-43 179.5 185 57.8
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 2.8e-43 179.1 167 62.3
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.8e-43 179.1 164 61.0
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 6.3e-43 177.9 159 62.9
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 6.3e-43 177.9 167 61.1
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.1e-42 177.2 167 61.7
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.4e-42 176.8 164 61.0
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.4e-42 176.8 165 60.0
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 1.4e-42 176.8 168 61.3
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.4e-42 176.8 174 59.8
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 2.4e-42 176.0 159 62.9
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 3.1e-42 175.6 162 60.5
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 4.1e-42 175.3 165 58.8
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 4.1e-42 175.3 162 59.9
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 5.3e-42 174.9 165 59.4
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 5.3e-42 174.9 165 59.4
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 5.3e-42 174.9 167 57.5
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 6.9e-42 174.5 167 61.1
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 6.9e-42 174.5 165 58.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 9.0e-42 174.1 165 58.2
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.2e-41 173.7 162 60.5
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.2e-41 173.7 162 59.3
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.6e-41 172.6 162 59.9
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-41 172.2 165 57.6
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 3.4e-41 172.2 95 89.5
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 5.9e-41 171.4 178 57.9
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.0e-40 170.6 95 88.4
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.7e-40 169.9 163 58.3
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 2.9e-40 169.1 167 56.3
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 3.8e-40 168.7 161 59.0
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 5.0e-40 168.3 164 58.5
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 6.5e-40 167.9 161 58.4
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 8.5e-40 167.5 143 64.3
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.1e-39 167.2 162 56.8
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.4e-39 166.8 208 51.4
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 1.9e-39 166.4 161 59.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.9e-39 166.4 161 59.0
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 2.5e-39 166.0 167 55.1
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 2.5e-39 166.0 162 56.8
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 2.5e-39 166.0 162 56.2
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 3.2e-39 165.6 165 56.4
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 5.5e-39 164.9 165 55.2
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 5.5e-39 164.9 159 58.5
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 7.2e-39 164.5 160 58.1
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 7.2e-39 164.5 161 57.8
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 9.3e-39 164.1 141 63.8
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.2e-38 163.7 158 58.9
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.2e-38 163.7 165 57.0
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 1.6e-38 163.3 159 56.6
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.1e-38 162.9 92 85.9
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.7e-38 162.5 159 56.6
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 4.6e-38 161.8 167 53.9
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 6.1e-38 161.4 95 80.0
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.0e-37 160.6 95 80.0
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 2.3e-37 159.5 95 78.9
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 2.3e-37 159.5 169 54.4
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.3e-37 159.5 167 58.1
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 3.0e-37 159.1 162 53.7
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 1.1e-36 157.1 95 77.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.5e-36 156.8 93 78.5
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.5e-36 156.8 93 78.5
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.5e-36 156.0 160 55.0
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.5e-36 156.0 137 60.6
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 5.7e-36 154.8 90 81.1
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 5.7e-36 154.8 90 81.1
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.7e-35 153.3 90 80.0
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 3.7e-35 152.1 159 55.3
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 4.8e-35 151.8 88 80.7
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 6.3e-35 151.4 197 50.8
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 3.1e-34 149.1 87 81.6
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 3.1e-34 149.1 167 56.3
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 5.3e-34 148.3 82 93.9
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.2e-32 142.9 141 53.9
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.2e-32 142.9 92 76.1
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 3.8e-32 142.1 163 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 5.0e-32 141.7 151 53.0
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.5e-32 141.4 167 49.1
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 2.5e-31 139.4 142 55.6
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.2e-30 137.1 89 70.8
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.6e-30 136.7 92 70.7
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 4.7e-30 135.2 89 70.8
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 6.1e-30 134.8 83 83.1
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 7.9e-30 134.4 84 79.8
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 3.0e-29 132.5 134 56.7
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.4e-28 128.6 91 72.5
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 2.2e-27 126.3 86 68.6
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 6.9e-26 121.3 131 55.0
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.2e-25 120.6 127 52.8
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.5e-25 120.2 93 62.4
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 4.5e-25 118.6 165 46.7
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 4.5e-25 118.6 76 75.0
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.2e-24 116.3 165 46.7
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 6.5e-24 114.8 69 79.7
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 7.2e-23 111.3 77 71.4
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 9.4e-23 110.9 61 90.2
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 8.0e-22 107.8 58 84.5
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 5.2e-21 105.1 99 50.5
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.3e-19 100.5 58 75.9
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.7e-19 99.0 70 71.4
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 2.1e-14 83.2 81 49.4
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 4.0e-13 79.0 89 40.4
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 2.0e-12 76.6 162 36.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 2.8e-11 72.8 107 39.3
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 7.0e-10 68.2 38 89.5
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 9.1e-10 67.8 92 34.8


User provided reference genes

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