Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 0.0e+00 1186.0 606 100.0
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 5.6e-275 950.7 548 88.3
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 7.1e-270 933.7 547 86.7
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.5e-256 889.4 550 82.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 4.4e-256 887.9 550 82.4
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.3e-255 886.3 548 82.5
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.9e-255 885.2 547 82.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.4e-254 882.9 550 82.7
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.5e-253 878.2 561 81.8
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.3e-252 876.3 548 81.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.0e-252 875.2 579 77.2
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.0e-252 875.2 579 77.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 5.1e-252 874.4 550 81.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 5.1e-252 874.4 554 81.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 6.6e-252 874.0 562 80.1
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 5.6e-251 870.9 550 80.4
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 9.6e-251 870.2 574 79.3
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.1e-250 869.0 550 81.8
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.6e-250 868.2 580 76.4
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.4e-249 865.5 577 77.3
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 3.1e-249 865.1 548 80.8
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 4.0e-249 864.8 554 79.6
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 5.3e-249 864.4 551 80.0
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 2.6e-248 862.1 550 80.4
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 4.5e-248 861.3 548 80.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.5e-248 861.3 580 75.7
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 5.8e-248 860.9 575 76.5
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 7.6e-248 860.5 580 76.2
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 7.6e-248 860.5 550 80.5
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 9.9e-248 860.1 548 80.5
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 9.9e-248 860.1 549 79.4
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.4e-246 856.3 548 79.9
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.9e-246 855.9 580 75.9
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 3.2e-246 855.1 548 79.7
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 4.2e-246 854.7 546 79.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 5.4e-246 854.4 550 80.5
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 7.1e-246 854.0 585 75.6
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.1e-245 852.4 551 78.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.1e-245 852.4 580 75.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 2.7e-245 852.0 549 79.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 3.5e-245 851.7 548 79.6
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 6.0e-245 850.9 580 75.3
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 7.9e-245 850.5 580 75.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.0e-244 850.1 580 75.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.0e-244 850.1 585 75.6
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.3e-244 849.7 548 78.8
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 5.1e-244 847.8 585 75.0
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 6.7e-244 847.4 548 78.1
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 6.7e-244 847.4 585 75.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.1e-243 846.7 541 80.8
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.5e-243 846.3 548 77.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.9e-243 845.9 546 78.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.3e-243 845.1 548 79.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 4.3e-243 844.7 549 78.3
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.3e-243 844.7 585 74.9
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 7.4e-243 844.0 550 77.6
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 7.4e-243 844.0 578 75.1
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 2.1e-242 842.4 548 77.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.1e-242 842.4 552 77.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.1e-242 842.4 549 77.2
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.4e-241 839.7 550 77.6
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.4e-241 839.0 580 74.5
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 3.1e-241 838.6 598 72.2
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 5.3e-241 837.8 548 77.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 6.9e-241 837.4 582 73.9
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.2e-240 836.6 548 77.0
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 2.6e-240 835.5 550 76.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.4e-240 835.1 545 77.4
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 4.5e-240 834.7 548 77.0
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 4.5e-240 834.7 550 76.7
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 5.8e-240 834.3 549 77.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.0e-239 833.6 548 77.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-239 833.6 548 77.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.0e-239 833.6 548 77.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.0e-239 833.6 569 76.8
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.3e-239 833.2 575 74.4
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.8e-239 831.6 550 77.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 6.5e-239 830.9 549 76.5
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 8.4e-239 830.5 550 76.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 8.4e-239 830.5 550 76.4
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.5e-238 828.9 578 72.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.2e-238 828.6 549 77.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.6e-237 826.2 550 75.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.6e-237 824.7 598 72.1
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.0e-236 823.5 547 77.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.3e-236 823.2 562 75.6
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.3e-236 822.4 547 75.9
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 6.7e-236 820.8 550 75.1
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.1e-235 820.1 550 76.9
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.9e-235 819.3 550 74.9
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 4.3e-235 818.1 550 75.5
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 7.4e-235 817.4 577 72.8
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.3e-234 816.6 547 76.8
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 3.7e-234 815.1 550 74.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-233 812.4 572 73.6
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 8.4e-231 803.9 546 74.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.4e-230 803.1 550 76.0
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.5e-230 802.4 540 75.0
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.5e-230 802.4 661 66.0
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 3.3e-227 792.0 582 72.5
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.3e-227 792.0 548 73.9
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 7.4e-227 790.8 548 73.7
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.6e-226 789.6 545 75.8
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.1e-225 786.9 550 72.4
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.8e-225 786.2 510 77.6
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 2.0e-219 766.1 596 68.1
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.8e-217 759.6 504 78.0
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 2.2e-215 752.7 494 78.5
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.4e-209 732.6 604 63.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 3.1e-209 732.3 581 66.6
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 9.1e-209 730.7 525 71.6
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.3e-204 716.1 426 84.3
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.0e-204 715.3 497 76.3
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.5e-198 696.0 548 65.3
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.6e-197 692.2 426 81.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.8e-196 689.9 548 66.8
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.0e-196 688.7 543 64.6
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.0e-180 635.6 504 68.3
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 2.6e-179 632.9 442 74.4
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.4e-179 632.5 375 82.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.4e-163 579.3 557 54.8
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.4e-161 573.2 542 54.6
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.0e-155 553.5 554 52.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 9.9e-155 551.2 435 65.3
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 9.3e-145 518.1 367 73.8
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.3e-142 509.6 283 90.5
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.3e-135 487.6 417 62.4
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.4e-129 466.8 577 46.1
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.7e-122 444.1 553 44.8
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.5e-121 439.1 314 73.2
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-112 411.0 245 82.4
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-110 404.4 280 75.0
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-109 400.2 353 62.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.7e-101 373.2 438 51.1
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.7e-96 357.1 196 87.2
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.0e-91 340.9 272 66.9
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.0e-90 338.6 317 59.9
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.6e-64 250.4 644 31.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.2e-59 235.3 506 32.8
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 5.8e-54 216.5 129 82.2
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-44 185.7 103 84.5
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.4e-44 184.5 149 61.1
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.2e-44 184.1 149 65.8
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.1e-43 181.4 120 76.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.1e-43 181.4 130 67.7
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.9e-33 148.3 135 57.8
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.1e-32 144.8 120 58.3
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.4e-31 141.4 597 26.3
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.1e-28 132.5 185 41.6
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 2.5e-25 121.3 98 66.3
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.0e-23 114.0 99 59.6
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.0e-23 112.8 66 80.3
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 1.2e-19 102.4 73 71.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.6e-19 102.1 78 62.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 6.9e-15 86.7 67 61.2
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 2.0e-14 85.1 49 79.6
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.4e-14 84.3 634 22.4
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.4e-14 84.3 225 32.0
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 3.4e-14 84.3 71 56.3
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 9.9e-14 82.8 48 79.2
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.8e-13 80.9 99 52.5
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 4.0e-07 60.8 29 93.1
Hund09584 Selenicereus undatus HOM05D000200 ORTHO05D000262 4.5e-06 57.4 36 72.2


User provided reference genes

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