Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 5143.9 2626 100.0
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2781.9 2695 56.4
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2737.6 2655 56.2
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 2718.0 2639 56.3
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2512.3 2611 52.6
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 2324.3 2605 50.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2267.7 2645 48.4
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2265.3 2637 48.5
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2115.1 2660 46.7
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2075.1 2655 45.6
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2029.2 2633 45.2
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2015.0 2627 44.8
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2001.9 2630 45.0
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1980.3 2686 43.6
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1946.4 2752 43.5
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1942.9 2619 44.2
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1939.1 2617 43.9
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1921.4 2678 44.0
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1921.0 2670 43.1
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1900.2 2705 43.3
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1895.2 2634 43.2
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1888.6 2654 43.8
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1880.9 2669 42.5
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1865.1 2631 42.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1860.1 2616 43.6
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1847.0 2646 42.1
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1800.4 2657 42.3
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1790.8 2630 42.3
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1781.9 2646 41.8
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1779.2 2604 41.8
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1770.7 2439 42.8
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1759.2 2640 40.8
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1743.8 2625 41.4
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1742.6 2622 41.0
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1740.7 2701 40.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1737.2 2623 41.0
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1736.9 2643 40.9
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1726.8 2238 45.0
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1696.8 2627 39.9
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1692.2 2627 40.0
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1679.8 2783 39.0
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1675.6 2656 39.1
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1673.7 2617 40.8
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1668.3 2682 39.1
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1656.3 2706 38.9
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1651.7 2616 38.9
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1647.9 2708 38.8
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1645.9 2630 39.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1641.7 2651 39.7
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1635.9 2634 39.7
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1634.0 2627 39.5
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1630.9 2639 39.6
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1626.3 2581 39.7
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1625.9 2598 40.0
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1624.0 2631 39.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1621.7 2614 39.4
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1620.1 2625 39.9
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1612.0 2636 39.8
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1607.4 2628 39.6
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1607.0 2646 38.5
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1606.3 2586 39.8
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1602.4 2637 39.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1596.6 2739 38.4
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1582.8 2625 39.4
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1568.1 2633 39.3
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1565.8 2617 38.9
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1563.9 2574 39.5
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1525.8 2672 38.5
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1469.5 2698 37.9
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1461.0 2627 37.3
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1423.7 2575 37.1
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1409.4 2600 36.0
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1399.4 2658 37.2
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1389.0 2662 37.2
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1379.4 2377 37.7
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1377.8 2054 41.4
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1371.3 2695 36.6
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1368.2 2483 38.2
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1365.5 2688 36.5
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1364.7 1784 44.8
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1339.7 2172 39.8
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1330.1 2306 37.9
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1316.2 2659 35.6
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1315.4 2681 34.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1263.1 2622 35.5
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1262.3 2643 35.0
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1253.0 2414 35.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1211.4 2617 34.7
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1202.6 2041 37.5
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1129.4 1778 39.0
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1092.4 2053 35.6
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1090.1 2277 34.3
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 4.0e-301 1039.6 2115 35.6
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 5.7e-300 1035.8 1822 36.8
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 6.6e-288 995.7 2251 33.6
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 8.6e-288 995.3 1705 38.1
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 5.9e-281 972.6 2510 31.7
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.1e-237 827.4 783 56.6
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 9.1e-213 746.1 936 45.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.4e-189 668.3 2746 26.2
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.3e-182 646.0 573 59.9
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.8e-177 628.2 841 43.2
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.0e-175 622.1 2569 25.2
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.2e-172 612.8 614 55.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.2e-172 612.8 2743 24.9
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.8e-160 572.4 2851 25.3
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.6e-156 559.3 2554 25.3
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.2e-145 523.1 1178 33.0
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.4e-144 519.6 1242 33.8
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 4.0e-144 518.1 611 49.9
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.2e-141 508.4 730 44.4
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 7.1e-133 480.7 760 40.5
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.8e-128 466.1 1134 30.6
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.2e-125 455.3 646 43.3
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 5.6e-122 444.5 582 45.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.8e-121 442.2 1177 30.9
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.1e-113 416.0 922 32.8
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.0e-102 380.6 326 61.3
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-98 367.1 724 35.6
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 5.7e-98 364.8 560 40.4
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.7e-92 345.9 409 46.5
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 8.8e-91 340.9 339 56.6
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-86 327.0 915 29.6
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.8e-81 309.3 470 43.0
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.8e-75 287.7 511 34.6
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.8e-64 253.4 202 60.4
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.5e-53 217.2 194 61.3
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 8.0e-52 211.5 1052 24.2
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 4.9e-49 202.2 218 50.9
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.7e-41 177.2 187 48.1
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.4e-40 174.1 350 32.9
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.3e-38 166.8 316 36.4
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.1e-37 164.5 364 31.0
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 5.6e-37 162.2 355 34.4
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.6e-36 159.5 486 29.4
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 2.3e-35 156.8 252 38.9
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 8.9e-35 154.8 209 42.6
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.9e-32 147.1 244 37.3
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.3e-29 136.3 278 33.1
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.8e-27 130.6 239 37.2
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.9e-22 112.8 149 45.6
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.9e-22 112.8 113 46.9
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 3.9e-22 112.8 151 41.1
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.5e-21 110.9 222 36.5
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.8e-19 104.0 126 43.7
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 5.4e-16 92.4 134 39.6
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.7e-15 90.1 92 48.9
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.0e-14 88.2 86 45.3
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 5.6e-13 82.4 359 23.7
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 9.6e-13 81.6 72 54.2
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.8e-12 80.1 114 43.9
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 5.3e-11 75.9 326 25.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 6.9e-11 75.5 164 36.6
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 3.4e-10 73.2 252 25.4
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 1.7e-09 70.9 78 47.4
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 2.2e-09 70.5 105 34.3
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.2e-09 70.5 163 35.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 8.4e-09 68.6 85 42.4
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 8.4e-09 68.6 85 42.4
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 1.1e-08 68.2 112 36.6
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 9.3e-08 65.1 79 44.3
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 2.7e-07 63.5 80 42.5
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.7e-07 63.5 106 32.1
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 6.0e-07 62.4 79 41.8
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 6.0e-07 62.4 171 33.3
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 7.9e-07 62.0 67 38.8
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.8e-06 60.8 92 35.9
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 1.8e-06 60.8 79 41.8
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 8.7e-06 58.5 95 38.9
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 8.7e-06 58.5 99 37.4


User provided reference genes

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