Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02010 Selenicereus undatus HOM05D002001 ORTHO05D383229 3.6e-48 194.5 92 100.0
SHI04310 Sapria himalayana HOM05D002001 ORTHO05D006833 2.4e-12 75.5 51 68.6
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 2.7e-11 72.0 66 54.5
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 4.5e-11 71.2 36 88.9
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 4.5e-11 71.2 39 82.1
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 4.5e-11 71.2 39 82.1
Sc04g0007250 Simmondsia chinensis HOM05D002001 ORTHO05D006833 4.5e-11 71.2 66 54.5
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 5.9e-11 70.9 66 51.5
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 7.8e-11 70.5 35 94.3
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 7.8e-11 70.5 39 82.1
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 1.7e-10 69.3 66 53.0
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 2.3e-10 68.9 66 50.0
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 2.3e-10 68.9 66 53.0
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 2.3e-10 68.9 36 83.3
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 2.9e-10 68.6 66 53.0
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 2.9e-10 68.6 66 51.5
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 2.9e-10 68.6 39 79.5
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 3.8e-10 68.2 36 83.3
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 3.8e-10 68.2 36 83.3
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 5.0e-10 67.8 36 80.6
MBI19_g08381_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 5.0e-10 67.8 36 83.3
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 5.0e-10 67.8 36 80.6
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 6.6e-10 67.4 36 77.8
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 6.6e-10 67.4 36 77.8
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 6.6e-10 67.4 36 83.3
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 6.6e-10 67.4 66 50.0
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 8.6e-10 67.0 66 50.0
CSS0027933 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 1.1e-09 66.6 66 51.5
Dinv10472 Davidia involucrata HOM05D002001 ORTHO05D006833 1.1e-09 66.6 63 55.6
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 1.1e-09 66.6 36 80.6
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 1.5e-09 66.2 39 76.9
Lj6A737G48 Lonicera japonica HOM05D002001 ORTHO05D006833 1.9e-09 65.9 36 80.6
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 1.9e-09 65.9 39 74.4
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 1.9e-09 65.9 36 80.6
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 1.9e-09 65.9 36 80.6
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 2.5e-09 65.5 36 80.6
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 2.5e-09 65.5 66 48.5
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 2.5e-09 65.5 39 74.4
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 2.5e-09 65.5 66 50.0
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 3.3e-09 65.1 36 80.6
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 3.3e-09 65.1 36 77.8
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 3.3e-09 65.1 36 77.8
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 3.3e-09 65.1 36 77.8
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.3e-09 64.7 36 77.8
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.3e-09 64.7 36 77.8
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 4.3e-09 64.7 36 77.8
Lalb_Chr10g0095701 Lupinus albus HOM05D002001 ORTHO05D006833 4.3e-09 64.7 35 80.0
Psat6g046600 Pisum sativum HOM05D002001 ORTHO05D006833 4.3e-09 64.7 39 71.8
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 4.3e-09 64.7 39 74.4
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 4.3e-09 64.7 39 74.4
SEGI_40984 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 4.3e-09 64.7 66 47.0
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 5.6e-09 64.3 71 45.1
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 5.6e-09 64.3 36 77.8
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 7.3e-09 63.9 36 77.8
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 9.5e-09 63.5 36 77.8
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 1.2e-08 63.2 36 75.0
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 1.2e-08 63.2 36 75.0
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 1.2e-08 63.2 36 72.2
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 1.2e-08 63.2 36 72.2
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 2.8e-08 62.0 39 69.2
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 2.8e-08 62.0 39 69.2
Zm00001eb159740 Zea mays HOM05D002001 ORTHO05D006833 2.8e-08 62.0 65 46.2
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 3.6e-08 61.6 36 77.8
CARHR144290 Cardamine hirsuta HOM05D002001 ORTHO05D006833 3.6e-08 61.6 36 77.8
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 77.8
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 66.7
unitig_46.g18398 Utricularia gibba HOM05D002001 ORTHO05D006833 4.7e-08 61.2 36 69.4
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 6.1e-08 60.8 39 66.7
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 6.1e-08 60.8 36 75.0
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 6.1e-08 60.8 37 75.7
AUR62030423 Chenopodium quinoa HOM05D002001 ORTHO05D006833 8.0e-08 60.5 35 80.0
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 1.0e-07 60.1 36 75.0
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 1.0e-07 60.1 36 75.0
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 1.8e-07 59.3 36 69.4
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 1.8e-07 59.3 36 80.6
Nitab4.5_0002803g0040 Nicotiana tabacum HOM05D002001 ORTHO05D006833 2.3e-07 58.9 36 72.2
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 3.0e-07 58.5 36 75.0
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 4.0e-07 58.2 39 66.7
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 4.0e-07 58.2 39 66.7
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 4.0e-07 58.2 39 64.1
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 5.2e-07 57.8 36 72.2
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 5.2e-07 57.8 36 72.2
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 6.8e-07 57.4 39 66.7
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 8.9e-07 57.0 39 61.5
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 8.9e-07 57.0 36 72.2


User provided reference genes

Program Settings