Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02008 Selenicereus undatus HOM05D002001 ORTHO05D006833 1.3e-114 416.4 208 100.0
Hund02009 Selenicereus undatus HOM05D002001 ORTHO05D006833 5.0e-106 387.9 196 98.5
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 5.2e-47 191.8 139 67.6
AUR62030423 Chenopodium quinoa HOM05D002001 ORTHO05D006833 5.2e-47 191.8 139 69.1
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 2.0e-46 189.9 139 69.1
CSS0024108 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 4.4e-46 188.7 144 63.9
Dinv10473 Davidia involucrata HOM05D002001 ORTHO05D006833 1.4e-44 183.7 153 61.4
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 3.2e-44 182.6 146 63.7
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 4.1e-44 182.2 145 64.1
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 4.1e-44 182.2 146 63.7
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 7.0e-44 181.4 142 63.4
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 1.2e-43 180.6 144 63.2
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 2.1e-43 179.9 142 62.7
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 7.8e-43 177.9 144 61.8
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 7.8e-43 177.9 144 61.8
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 7.8e-43 177.9 144 61.8
FAN12G2518 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.0e-42 177.6 144 63.9
FAN22G0254 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.0e-42 177.6 144 63.9
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 1.7e-42 176.8 175 56.6
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 2.3e-42 176.4 144 61.8
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 3.0e-42 176.0 144 63.2
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 3.0e-42 176.0 144 63.2
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 3.0e-42 176.0 144 61.8
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 3.9e-42 175.6 138 65.9
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 8.6e-42 174.5 144 62.5
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 8.6e-42 174.5 138 63.8
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 2.5e-41 172.9 144 59.7
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 3.3e-41 172.6 144 61.1
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 4.3e-41 172.2 144 61.8
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 4.3e-41 172.2 142 58.5
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 1.2e-40 170.6 144 62.5
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 1.6e-40 170.2 138 64.5
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 2.1e-40 169.9 144 60.4
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 2.1e-40 169.9 144 59.0
Ca_12539_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 3.6e-40 169.1 144 59.0
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 3.6e-40 169.1 154 55.8
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 4.7e-40 168.7 146 59.6
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 2.3e-39 166.4 142 58.5
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 2.3e-39 166.4 142 59.2
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 3.1e-39 166.0 142 59.9
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 4.0e-39 165.6 150 56.7
Lj6A737G49 Lonicera japonica HOM05D002001 ORTHO05D006833 4.0e-39 165.6 142 60.6
Psat6g046600 Pisum sativum HOM05D002001 ORTHO05D006833 4.0e-39 165.6 144 56.9
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 5.2e-39 165.2 142 57.7
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 5.2e-39 165.2 144 58.3
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 6.8e-39 164.9 146 61.0
Nitab4.5_0002803g0040 Nicotiana tabacum HOM05D002001 ORTHO05D006833 8.9e-39 164.5 143 60.1
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 1.2e-38 164.1 198 47.5
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 1.5e-38 163.7 144 59.7
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 2.0e-38 163.3 154 53.9
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 2.6e-38 162.9 142 59.9
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 3.4e-38 162.5 144 59.0
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 4.4e-38 162.2 142 57.7
Sc04g0007240 Simmondsia chinensis HOM05D002001 ORTHO05D006833 5.8e-38 161.8 123 65.0
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 9.9e-38 161.0 138 55.8
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 1.3e-37 160.6 138 58.0
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 1.3e-37 160.6 179 50.3
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 2.2e-37 159.8 178 50.6
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 2.2e-37 159.8 138 59.4
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 3.7e-37 159.1 169 49.7
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 6.4e-37 158.3 178 50.0
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 1.1e-36 157.5 181 49.2
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 1.1e-36 157.5 143 55.9
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 1.4e-36 157.1 178 50.0
Lalb_Chr10g0095701 Lupinus albus HOM05D002001 ORTHO05D006833 1.4e-36 157.1 138 56.5
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 1.4e-36 157.1 143 55.9
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 2.4e-36 156.4 178 51.1
PGSC0003DMG400029468 Solanum tuberosum HOM05D002001 ORTHO05D006833 4.1e-36 155.6 143 55.9
Oeu062636.1 Olea europaea HOM05D002001 ORTHO05D006833 5.4e-36 155.2 143 55.2
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 1.2e-35 154.1 137 55.5
SHI04310 Sapria himalayana HOM05D002001 ORTHO05D006833 1.6e-35 153.7 166 49.4
Oeu062634.1 Olea europaea HOM05D002001 ORTHO05D006833 2.1e-35 153.3 143 53.8
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 3.5e-35 152.5 146 53.4
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 2.3e-34 149.8 142 56.3
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 6.6e-34 148.3 144 52.1
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 8.6e-34 147.9 142 54.2
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 1.5e-33 147.1 144 51.4
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 1.9e-33 146.7 146 50.0
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 2.5e-33 146.4 197 40.6
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 2.5e-33 146.4 197 40.6
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 3.3e-33 146.0 144 51.4
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 4.3e-33 145.6 144 52.8
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 5.6e-33 145.2 200 40.0
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 5.6e-33 145.2 200 40.0
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 5.6e-33 145.2 200 40.0
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 5.6e-33 145.2 141 53.9
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 5.6e-33 145.2 144 50.7
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 7.3e-33 144.8 144 52.8
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 9.5e-33 144.4 144 50.7
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 9.5e-33 144.4 144 48.6
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 1.2e-32 144.1 144 50.7
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 2.8e-32 142.9 142 50.0
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 1.1e-31 141.0 142 51.4
HPP92_024776 Vanilla planifolia HOM05D001290 ORTHO05D006833 1.1e-31 141.0 146 53.4
CARHR144290 Cardamine hirsuta HOM05D002001 ORTHO05D006833 1.4e-31 140.6 139 50.4
ClCG09G016760 Citrullus lanatus HOM05D002001 ORTHO05D006833 2.0e-30 136.7 163 49.7
Nn4g24387 Nelumbo nucifera HOM05D002001 ORTHO05D006833 3.8e-29 132.5 127 52.8
SEGI_40984 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 4.9e-29 132.1 144 44.4
SEGI_18225 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 9.2e-28 127.9 141 44.7
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 1.3e-26 124.0 143 46.2
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 3.0e-26 122.9 142 48.6
Hund24272 Selenicereus undatus HOM05D002001 ORTHO05D006833 1.2e-24 117.5 59 94.9
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 1.6e-24 117.1 144 43.8
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 4.9e-21 105.5 145 42.1
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 8.4e-21 104.8 156 40.4
RcHm_v2.0_Chr2g0101461 Rosa chinensis HOM05D002001 ORTHO05D006833 1.3e-18 97.4 56 82.1
RcHm_v2.0_Chr6g0263901 Rosa chinensis HOM05D002001 ORTHO05D006833 1.3e-18 97.4 56 82.1
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 2.0e-14 83.6 80 45.0
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 7.6e-14 81.6 82 46.3
MBI19_g08381_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 2.9e-13 79.7 43 83.7
Cre02.g080100 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D006833 4.8e-08 62.4 63 42.9
unitig_46.g18398 Utricularia gibba HOM05D002001 ORTHO05D006833 5.8e-06 55.5 142 33.8


User provided reference genes

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