Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02006 Selenicereus undatus HOM05D002001 ORTHO05D006833 8.4e-44 179.9 85 100.0
Ca_12538_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 2.5e-16 88.6 48 85.4
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 5.7e-16 87.4 44 93.2
Sc04g0007250 Simmondsia chinensis HOM05D002001 ORTHO05D006833 5.7e-16 87.4 44 93.2
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 7.4e-16 87.0 44 90.9
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 7.4e-16 87.0 44 90.9
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 7.4e-16 87.0 44 90.9
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 7.4e-16 87.0 44 90.9
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 9.7e-16 86.7 44 88.6
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 1.6e-15 85.9 48 85.4
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 1.6e-15 85.9 44 88.6
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 1.6e-15 85.9 44 88.6
MBI19_g08381_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 1.6e-15 85.9 44 88.6
MBI19_g34072_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 1.6e-15 85.9 44 88.6
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 1.6e-15 85.9 44 88.6
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 1.6e-15 85.9 44 88.6
Psat6g046600 Pisum sativum HOM05D002001 ORTHO05D006833 2.2e-15 85.5 44 86.4
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 2.2e-15 85.5 44 88.6
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 2.2e-15 85.5 44 88.6
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 2.2e-15 85.5 44 90.9
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 2.8e-15 85.1 44 90.9
CSS0027933 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 2.8e-15 85.1 44 90.9
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 2.8e-15 85.1 44 90.9
Dinv10472 Davidia involucrata HOM05D002001 ORTHO05D006833 3.7e-15 84.7 44 88.6
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 3.7e-15 84.7 44 88.6
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 3.7e-15 84.7 44 88.6
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 3.7e-15 84.7 44 88.6
HPP92_024777 Vanilla planifolia HOM05D002001 ORTHO05D006833 3.7e-15 84.7 44 88.6
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 3.7e-15 84.7 44 90.9
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 4.8e-15 84.3 44 86.4
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 4.8e-15 84.3 44 86.4
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 6.3e-15 84.0 44 86.4
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 6.3e-15 84.0 44 88.6
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 6.3e-15 84.0 44 88.6
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 6.3e-15 84.0 44 88.6
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 6.3e-15 84.0 44 86.4
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 8.2e-15 83.6 44 88.6
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 8.2e-15 83.6 44 86.4
Lj6A737G48 Lonicera japonica HOM05D002001 ORTHO05D006833 8.2e-15 83.6 44 88.6
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 8.2e-15 83.6 44 86.4
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 1.1e-14 83.2 44 86.4
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 1.1e-14 83.2 44 88.6
unitig_46.g18398 Utricularia gibba HOM05D002001 ORTHO05D006833 1.1e-14 83.2 44 88.6
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 1.4e-14 82.8 44 81.8
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 1.4e-14 82.8 44 86.4
FAN22G0254 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.8e-14 82.4 44 86.4
Lalb_Chr10g0095691 Lupinus albus HOM05D002001 ORTHO05D006833 1.8e-14 82.4 44 84.1
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 1.8e-14 82.4 44 84.1
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 2.4e-14 82.0 44 86.4
SEGI_40984 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 2.4e-14 82.0 44 88.6
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 3.1e-14 81.6 44 84.1
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 3.1e-14 81.6 44 84.1
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 3.1e-14 81.6 44 81.8
SEGI_01715 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 3.1e-14 81.6 43 90.7
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 4.1e-14 81.3 44 84.1
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 4.1e-14 81.3 44 84.1
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 4.1e-14 81.3 44 84.1
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 4.1e-14 81.3 44 84.1
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 4.1e-14 81.3 44 84.1
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 5.3e-14 80.9 44 84.1
FAN12G2518 Fragaria x ananassa HOM05D001103 ORTHO05D006833 5.3e-14 80.9 44 86.4
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 84.1
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 84.1
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 84.1
CARHR144290 Cardamine hirsuta HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 84.1
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 84.1
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 84.1
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 88.6
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 6.9e-14 80.5 44 84.1
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 9.0e-14 80.1 44 84.1
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 9.0e-14 80.1 44 81.8
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 9.0e-14 80.1 44 81.8
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 9.0e-14 80.1 44 81.8
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 9.0e-14 80.1 44 81.8
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 9.0e-14 80.1 44 81.8
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 1.2e-13 79.7 44 84.1
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 1.2e-13 79.7 44 84.1
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 81.8
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 84.1
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 84.1
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 84.1
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 84.1
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 84.1
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 84.1
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 81.8
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 1.5e-13 79.3 44 79.5
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 2.0e-13 79.0 44 84.1
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 2.0e-13 79.0 44 81.8
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 2.0e-13 79.0 44 81.8
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 2.0e-13 79.0 44 86.4
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 2.0e-13 79.0 44 79.5
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 2.0e-13 79.0 44 79.5
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 3.4e-13 78.2 44 79.5
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 3.4e-13 78.2 44 79.5
CSS0021671 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 3.4e-13 78.2 44 81.8
Zm00001eb159740 Zea mays HOM05D002001 ORTHO05D006833 3.4e-13 78.2 44 81.8
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 3.8e-12 74.7 44 79.5
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 1.4e-11 72.8 44 75.0
AUR62030423 Chenopodium quinoa HOM05D002001 ORTHO05D006833 1.4e-11 72.8 44 75.0
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 9.4e-11 70.1 44 77.3
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 4.6e-10 67.8 44 72.7
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 8.8e-09 63.5 44 65.9
Cre02.g080100 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D006833 1.7e-07 59.3 44 61.4


User provided reference genes

Program Settings