Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.2e-203 713.0 378 100.0
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 4.0e-170 601.7 376 76.1
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 1.4e-167 593.2 380 74.5
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.3e-156 555.4 377 69.0
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 4.3e-156 555.1 376 69.7
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 7.3e-156 554.3 372 71.0
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 6.2e-155 551.2 372 68.8
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 8.0e-155 550.8 372 68.5
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.3e-154 549.3 377 69.8
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 8.9e-154 547.4 372 70.2
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 1.2e-153 547.0 377 69.5
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.5e-153 546.6 375 69.3
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.9e-151 539.7 377 68.4
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 1.9e-151 539.7 377 68.2
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 4.1e-151 538.5 377 67.4
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 4.6e-150 535.0 377 67.1
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 7.8e-150 534.3 375 68.5
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 2.3e-149 532.7 378 68.5
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 3.9e-149 531.9 377 74.3
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 5.0e-149 531.6 377 67.9
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.1e-148 530.4 377 66.0
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 1.5e-148 530.0 377 70.8
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.5e-148 529.3 377 67.6
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 2.5e-148 529.3 372 67.2
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 2.5e-148 529.3 377 65.5
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.2e-147 526.9 377 65.5
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.6e-147 526.6 378 67.2
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 2.1e-147 526.2 379 65.4
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 2.8e-147 525.8 377 74.0
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 3.6e-147 525.4 372 65.9
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 4.7e-147 525.0 378 74.1
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 6.8e-146 521.2 368 66.8
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 1.2e-145 520.4 381 67.5
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.2e-145 520.4 372 64.5
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.2e-145 520.4 369 66.4
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.0e-145 519.6 379 66.0
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 2.0e-145 519.6 368 74.7
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 3.4e-145 518.8 370 67.6
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 4.4e-145 518.5 368 66.0
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 4.4e-145 518.5 368 66.0
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 4.4e-145 518.5 377 65.8
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 5.8e-145 518.1 368 66.3
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 5.8e-145 518.1 368 66.3
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 5.8e-145 518.1 386 65.3
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 9.8e-145 517.3 368 66.0
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.3e-144 516.9 368 65.5
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.3e-144 516.9 368 65.8
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.7e-144 516.5 370 67.6
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.7e-144 516.5 368 66.3
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 1.7e-144 516.5 368 66.0
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 1.7e-144 516.5 368 66.0
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 1.7e-144 516.5 368 66.0
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.9e-144 515.8 370 67.6
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 2.9e-144 515.8 372 64.0
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 4.9e-144 515.0 368 66.6
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 4.9e-144 515.0 377 73.5
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 4.9e-144 515.0 371 64.7
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 7.1e-143 511.1 386 71.5
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 9.2e-143 510.8 416 61.1
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 9.2e-143 510.8 378 65.9
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.2e-142 510.4 371 64.2
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.7e-142 509.2 370 66.8
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.7e-142 509.2 378 64.3
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 4.6e-142 508.4 370 65.1
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 4.6e-142 508.4 377 72.9
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.7e-141 506.5 381 65.1
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 3.0e-141 505.8 377 71.9
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 2.5e-140 502.7 400 63.8
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.5e-140 502.7 368 72.8
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 2.5e-140 502.7 372 74.7
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 4.3e-140 501.9 386 62.7
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 4.3e-140 501.9 378 63.5
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 2.8e-139 499.2 341 68.0
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 8.1e-139 497.7 372 72.0
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.8e-138 496.5 377 71.1
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 4.0e-138 495.4 368 73.6
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.6e-137 492.7 361 66.8
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.8e-137 491.5 377 71.9
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 9.9e-137 490.7 368 72.3
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.7e-136 490.0 368 64.1
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 6.4e-136 488.0 368 71.7
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 8.4e-136 487.6 368 72.6
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.4e-135 486.9 368 64.1
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.4e-135 486.9 368 72.3
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 7.1e-135 484.6 378 72.0
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.2e-134 483.8 368 71.7
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.7e-134 482.6 368 71.5
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 4.6e-134 481.9 386 61.9
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.5e-132 476.9 354 66.1
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.5e-132 476.9 369 71.0
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.9e-132 476.5 381 61.7
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 4.3e-132 475.3 382 63.4
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 4.7e-131 471.9 347 68.0
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.5e-129 466.8 374 62.3
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 5.8e-129 464.9 325 68.6
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 2.2e-128 463.0 368 68.2
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 2.2e-128 463.0 368 68.2
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 2.9e-128 462.6 328 67.7
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.9e-127 459.9 381 61.2
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 4.2e-127 458.8 368 62.0
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.1e-124 450.7 336 65.2
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 4.3e-124 448.7 335 64.5
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 5.6e-124 448.4 354 63.0
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 5.6e-124 448.4 316 68.0
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 5.3e-122 441.8 364 61.0
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.2e-121 440.7 368 67.4
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 3.8e-120 435.6 281 72.2
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 3.2e-119 432.6 361 60.9
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 6.0e-118 428.3 374 54.3
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 7.9e-118 427.9 377 57.0
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 3.1e-114 416.0 281 79.7
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.3e-109 400.6 377 54.9
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 8.7e-109 397.9 253 72.7
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.5e-108 396.4 379 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.1e-106 391.0 363 51.2
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 9.0e-106 387.9 382 52.1
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.5e-105 387.1 382 49.7
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 3.8e-104 382.5 257 70.0
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.8e-101 373.6 309 71.2
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 2.5e-100 369.8 253 68.0
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 4.2e-95 352.4 318 58.8
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 5.5e-87 325.5 193 77.2
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 3.1e-82 309.7 369 46.6
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.2e-75 287.0 214 66.4
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 6.1e-70 268.9 213 62.4
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.5e-63 247.7 530 30.9
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 6.1e-62 242.3 213 57.7
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.7e-56 224.2 146 69.9
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 7.5e-52 208.8 113 85.0
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 7.5e-52 208.8 273 44.3
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.7e-51 207.6 113 85.8
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.2e-51 207.2 151 66.2
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 7.8e-49 198.7 366 33.9
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.4e-42 176.0 139 58.3
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 2.1e-30 137.5 134 48.5
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 2.5e-23 114.0 239 32.2
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 5.6e-23 112.8 146 44.5
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.1e-22 110.9 74 59.5
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 3.6e-22 110.2 59 83.1
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.5e-20 104.8 285 30.5
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 8.4e-19 99.0 66 68.2
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.2e-14 85.1 56 66.1
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.6e-14 84.7 52 65.4
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 2.8e-14 84.0 76 57.9
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.7e-14 83.2 59 59.3
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 8.1e-14 82.4 48 83.3
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 2.1e-06 57.8 40 57.5


User provided reference genes

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