Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 8.4e-277 956.4 499 100.0
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.9e-128 463.0 473 56.0
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.2e-111 406.0 378 61.1
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.3e-107 394.4 462 52.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.7e-107 394.0 466 51.5
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 2.2e-107 393.7 442 51.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 8.2e-107 391.7 453 52.1
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 4.1e-106 389.4 339 59.3
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 5.3e-106 389.0 446 50.9
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.6e-105 387.5 423 53.9
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 3.5e-105 386.3 479 49.1
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 5.9e-105 385.6 454 50.7
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.7e-104 384.0 412 53.2
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 2.2e-104 383.6 466 47.4
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.2e-104 383.6 337 62.6
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 5.0e-104 382.5 415 53.7
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.1e-103 381.3 454 51.5
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.5e-103 380.2 450 51.3
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 7.2e-103 378.6 429 51.0
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 2.1e-102 377.1 414 53.1
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 4.7e-102 375.9 366 56.6
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 6.1e-102 375.6 448 51.1
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 8.0e-102 375.2 339 59.0
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.0e-101 374.8 445 51.5
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.8e-101 374.0 340 60.0
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 6.8e-101 372.1 418 53.8
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 8.8e-101 371.7 427 53.2
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 8.8e-101 371.7 419 52.0
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.0e-100 370.5 397 53.1
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 2.0e-100 370.5 418 53.6
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 3.4e-100 369.8 433 50.3
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 3.4e-100 369.8 397 54.7
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 8.3e-99 365.2 339 57.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.4e-98 364.4 460 47.8
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 4.1e-98 362.8 343 58.6
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.0e-98 362.1 431 50.1
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.6e-97 360.9 417 52.3
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.6e-97 360.9 431 50.3
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.3e-96 357.8 455 46.6
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.3e-96 357.8 432 49.8
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.7e-96 357.5 430 50.0
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.7e-96 357.5 450 48.4
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.2e-96 357.1 442 48.2
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.8e-96 356.3 432 49.8
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 5.0e-96 355.9 341 56.0
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 5.0e-96 355.9 406 49.8
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 5.0e-96 355.9 343 56.9
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.1e-95 354.8 344 53.2
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-95 353.6 351 55.0
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.5e-95 353.6 428 49.8
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 9.4e-95 351.7 344 53.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.2e-94 351.3 406 50.2
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.7e-94 350.1 351 53.8
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 3.6e-94 349.7 408 49.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.6e-94 349.7 340 55.9
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 6.1e-94 349.0 388 50.0
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-93 348.2 354 53.7
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.4e-93 347.8 319 59.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.8e-93 347.4 376 53.7
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 8.8e-93 345.1 422 48.1
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.0e-92 344.0 409 48.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 7.5e-92 342.0 424 47.9
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 2.2e-91 340.5 368 51.1
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 2.4e-90 337.0 437 49.0
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.4e-90 335.9 340 54.7
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 7.0e-90 335.5 473 45.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.6e-89 334.3 367 55.3
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.7e-89 333.6 328 53.7
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 5.9e-89 332.4 449 45.9
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 6.6e-88 328.9 489 44.0
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 3.3e-87 326.6 333 51.7
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 3.3e-87 326.6 423 47.8
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 3.3e-87 326.6 463 45.4
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 7.2e-87 325.5 413 47.9
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.6e-86 324.3 336 51.5
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.6e-86 323.2 398 48.0
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 4.7e-86 322.8 428 47.0
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 6.1e-86 322.4 438 46.6
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 6.8e-85 318.9 371 48.2
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.2e-84 318.2 422 48.6
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.5e-84 317.8 333 51.7
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.0e-84 317.4 426 44.6
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 7.5e-84 315.5 428 47.2
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.7e-83 313.2 336 52.4
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-79 301.2 400 47.8
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 3.4e-76 290.0 434 44.5
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.9e-75 286.2 477 41.7
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.6e-73 279.6 326 49.1
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 3.0e-72 276.9 409 46.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.5e-68 264.6 214 63.6
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.9e-67 260.4 188 69.7
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.3e-67 258.8 296 49.7
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 7.1e-66 255.8 306 50.0
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.2e-65 255.0 381 40.9
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.2e-65 255.0 286 48.6
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 3.5e-65 253.4 332 41.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.3e-64 251.5 358 45.8
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 3.0e-64 250.4 359 46.8
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 3.6e-62 243.4 504 35.9
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.5e-60 238.0 316 44.0
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 7.6e-60 235.7 356 43.3
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.8e-57 225.7 280 47.5
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.0e-56 225.3 277 45.5
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.3e-55 220.3 277 43.3
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 3.3e-55 220.3 214 57.9
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.1e-54 217.6 277 43.7
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.6e-54 216.9 335 43.0
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 6.2e-54 216.1 200 55.0
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.2e-54 216.1 341 43.1
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.1e-53 215.3 276 43.5
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.8e-53 214.5 182 59.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 2.2e-51 207.6 321 39.3
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 8.4e-51 205.7 150 67.3
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.2e-50 203.8 281 40.9
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.3e-48 198.4 166 59.0
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 3.0e-48 197.2 147 65.3
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.6e-46 191.4 166 57.2
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 3.6e-46 190.3 166 57.2
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-45 188.7 269 44.6
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.8e-45 188.0 288 39.2
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 5.3e-45 186.4 288 39.2
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 6.9e-45 186.0 288 39.2
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.2e-43 181.0 180 52.2
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 6.4e-43 179.5 298 37.2
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.6e-41 174.9 279 37.6
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 3.1e-37 160.6 121 62.0
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 6.9e-37 159.5 165 52.7
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.0e-37 159.1 181 46.4
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 2.0e-36 157.9 197 51.3
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 9.0e-29 132.5 286 33.2
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 4.5e-28 130.2 181 40.3
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.4e-26 125.2 187 39.0
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.6e-25 121.7 144 49.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.6e-25 121.7 403 26.3
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 6.0e-25 119.8 104 61.5
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.3e-23 113.6 117 52.1
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 2.1e-22 111.3 242 35.5
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.2e-20 105.5 168 40.5
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.0e-16 92.4 65 63.1
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-15 89.0 90 47.8
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 7.4e-15 86.3 91 45.1
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.4e-15 86.3 166 36.1
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 1.3e-14 85.5 93 44.1
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 2.8e-14 84.3 174 33.9
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 1.4e-13 82.0 287 29.6
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 6.9e-13 79.7 46 71.7
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 7.7e-12 76.3 65 61.5
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 2.9e-11 74.3 131 38.2
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.9e-11 74.3 131 38.2
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.7e-06 58.5 38 71.1
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 6.3e-06 56.6 28 89.3


User provided reference genes

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