Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1220F.1_g268110 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 3.5e-14 80.5 43 100.0
Hma1.2p1_1220F.1_g268115 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 3.5e-14 80.5 43 100.0
Hma1.2p1_2907F.1_g330145 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 3.5e-14 80.5 43 100.0
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 1.9e-12 74.7 41 97.6
FAN28G2322 Fragaria x ananassa HOM05D002112 ORTHO05D005830 2.8e-11 70.9 42 85.7
Oeu037772.1 Olea europaea HOM05D002112 ORTHO05D005830 1.1e-10 68.9 42 83.3
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 2.3e-10 67.8 42 83.3
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 3.1e-10 67.4 42 78.6
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 4.0e-10 67.0 42 81.0
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 4.0e-10 67.0 42 81.0
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 4.0e-10 67.0 42 81.0
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 4.0e-10 67.0 42 81.0
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 5.2e-10 66.6 42 83.3
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 5.2e-10 66.6 42 83.3
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 5.2e-10 66.6 42 78.6
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 6.8e-10 66.2 42 81.0
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 6.8e-10 66.2 42 81.0
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 8.9e-10 65.9 42 78.6
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 8.9e-10 65.9 42 78.6
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 8.9e-10 65.9 40 82.5
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 8.9e-10 65.9 40 82.5
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 8.9e-10 65.9 42 81.0
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 8.9e-10 65.9 42 81.0
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 8.9e-10 65.9 42 81.0
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 1.2e-09 65.5 42 81.0
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.2e-09 65.5 42 78.6
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 1.5e-09 65.1 39 84.6
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 1.5e-09 65.1 40 80.0
Oeu010464.1 Olea europaea HOM05D002112 ORTHO05D005830 1.5e-09 65.1 42 81.0
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.5e-09 65.1 42 78.6
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 2.0e-09 64.7 42 81.0
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 2.0e-09 64.7 42 78.6
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 2.0e-09 64.7 42 78.6
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 2.6e-09 64.3 42 78.6
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 2.6e-09 64.3 40 80.0
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 4.4e-09 63.5 42 78.6
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 4.4e-09 63.5 40 82.5
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 4.4e-09 63.5 40 80.0
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 5.8e-09 63.2 42 76.2
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 5.8e-09 63.2 42 76.2
Lj1A1151T83 Lonicera japonica HOM05D002112 ORTHO05D005830 5.8e-09 63.2 36 88.9
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 7.6e-09 62.8 40 80.0
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 7.6e-09 62.8 40 80.0
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 7.6e-09 62.8 40 80.0
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 9.9e-09 62.4 40 77.5
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 9.9e-09 62.4 40 77.5
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 9.9e-09 62.4 40 77.5
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 9.9e-09 62.4 42 76.2
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 9.9e-09 62.4 42 73.8
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 9.9e-09 62.4 40 77.5
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 1.3e-08 62.0 42 73.8
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 1.3e-08 62.0 40 75.0
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 1.3e-08 62.0 40 75.0
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 1.3e-08 62.0 40 75.0
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 1.3e-08 62.0 42 73.8
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.3e-08 62.0 42 73.8
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 1.7e-08 61.6 40 80.0
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 2.2e-08 61.2 42 73.8
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 2.2e-08 61.2 42 73.8
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 2.2e-08 61.2 40 72.5
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 2.2e-08 61.2 40 75.0
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 2.9e-08 60.8 42 73.8
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 3.7e-08 60.5 42 71.4
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 3.7e-08 60.5 40 67.5
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 6.4e-08 59.7 42 69.0
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 6.4e-08 59.7 42 69.0
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 6.4e-08 59.7 42 69.0
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 6.4e-08 59.7 40 70.0
AUR62038882 Chenopodium quinoa HOM05D002112 ORTHO05D005830 8.4e-08 59.3 36 77.8
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 8.4e-08 59.3 42 71.4
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 8.4e-08 59.3 42 69.0
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 2.4e-07 57.8 42 66.7
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 3.2e-07 57.4 42 64.3
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 3.2e-07 57.4 42 69.0
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 5.4e-07 56.6 42 64.3
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 5.4e-07 56.6 42 64.3
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 5.4e-07 56.6 42 64.3
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 7.1e-07 56.2 42 61.9
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 7.1e-07 56.2 42 64.3
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 1.6e-06 55.1 42 69.0
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 6.0e-06 53.1 40 67.5


User provided reference genes

Program Settings