Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 4.7e-171 604.7 378 100.0
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.3e-88 330.9 256 76.2
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.2e-81 307.8 265 66.0
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 4.5e-81 305.8 265 70.2
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.3e-75 287.7 270 66.7
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.0e-72 278.1 267 60.7
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 8.5e-72 275.0 265 68.3
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.1e-71 274.6 265 64.2
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.9e-71 273.9 267 56.2
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 2.5e-71 273.5 265 66.0
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 7.2e-71 271.9 265 64.9
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.6e-70 270.8 267 60.3
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 3.0e-69 266.5 268 55.6
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.7e-69 265.4 267 59.6
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.7e-69 265.4 264 60.2
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 3.3e-68 263.1 260 60.0
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.3e-67 261.2 269 54.6
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 2.2e-67 260.4 271 56.8
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.3e-67 258.8 261 55.2
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 2.4e-66 256.9 266 57.1
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 2.4e-66 256.9 252 60.7
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.2e-65 254.6 265 57.4
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 1.3e-64 251.1 263 55.1
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 1.7e-64 250.8 266 61.7
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 2.2e-64 250.4 269 53.5
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 6.5e-64 248.8 258 60.5
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 8.5e-64 248.4 281 51.2
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.5e-63 246.9 282 55.3
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 3.2e-63 246.5 269 61.0
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 2.7e-62 243.4 284 53.5
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.6e-62 243.0 267 55.4
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 6.1e-62 242.3 263 67.3
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 8.0e-62 241.9 271 52.4
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 8.0e-62 241.9 269 62.1
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.0e-60 237.3 268 57.5
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 2.0e-60 237.3 262 58.4
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 2.6e-60 236.9 283 50.2
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 4.4e-60 236.1 282 51.4
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 2.2e-59 233.8 262 52.7
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 9.1e-58 228.4 262 64.1
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 9.1e-58 228.4 255 62.0
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 2.0e-57 227.3 270 50.7
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 4.5e-57 226.1 271 53.9
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 4.5e-57 226.1 267 68.2
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.9e-57 225.7 276 58.0
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.3e-56 224.6 269 58.0
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 2.3e-56 223.8 255 61.6
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 3.8e-56 223.0 259 56.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 6.5e-56 222.2 268 63.4
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 6.5e-56 222.2 267 64.8
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.5e-55 221.1 265 55.1
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 4.2e-55 219.5 286 49.3
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.6e-54 217.6 290 50.7
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 2.1e-54 217.2 242 51.2
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 3.6e-54 216.5 264 51.5
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 3.6e-54 216.5 264 51.5
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.0e-53 214.9 263 51.0
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 1.0e-53 214.9 265 60.4
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 1.4e-53 214.5 262 51.9
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 2.3e-53 213.8 265 53.2
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 2.3e-53 213.8 264 55.3
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 3.0e-53 213.4 273 66.7
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 3.0e-53 213.4 123 79.7
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 4.0e-53 213.0 291 55.7
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 4.0e-53 213.0 259 60.6
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 5.2e-53 212.6 250 61.6
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 8.8e-53 211.8 252 63.5
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.5e-52 211.1 237 55.3
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.5e-52 211.1 237 55.3
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 2.0e-52 210.7 264 54.2
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.0e-52 210.7 270 56.3
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.0e-52 210.7 227 52.0
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.6e-52 210.3 250 52.8
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 3.4e-52 209.9 278 65.5
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 4.4e-52 209.5 264 52.3
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 4.4e-52 209.5 258 56.6
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 7.5e-52 208.8 274 59.1
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 9.8e-52 208.4 269 48.0
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 2.2e-51 207.2 282 57.4
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.2e-51 207.2 262 49.2
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.8e-51 206.8 284 54.6
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.8e-51 206.8 284 54.6
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.7e-51 206.5 274 58.8
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 1.8e-50 204.1 260 50.4
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.8e-50 204.1 250 49.2
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.4e-50 203.8 269 54.6
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 4.1e-50 203.0 269 61.3
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 7.0e-50 202.2 266 50.8
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.2e-49 201.4 133 73.7
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.6e-49 201.1 273 55.3
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.6e-49 201.1 274 47.8
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 2.0e-49 200.7 258 50.8
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 3.5e-49 199.9 245 59.2
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 4.5e-49 199.5 266 49.2
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 4.5e-49 199.5 288 46.2
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 4.5e-49 199.5 252 50.4
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-48 198.4 251 59.8
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.7e-48 197.6 291 44.3
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.7e-48 197.6 264 55.7
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 2.3e-48 197.2 231 52.4
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.3e-48 197.2 121 76.0
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 3.8e-48 196.4 267 54.3
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 3.8e-48 196.4 264 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 8.6e-48 195.3 127 74.8
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 8.6e-48 195.3 276 51.4
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.5e-47 194.5 272 47.1
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.5e-47 194.5 267 52.1
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.9e-47 194.1 272 46.3
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 2.5e-47 193.7 265 47.5
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 5.6e-47 192.6 267 56.9
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 9.5e-47 191.8 261 49.8
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.8e-46 190.3 225 49.3
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 6.1e-46 189.1 118 76.3
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.8e-45 187.6 227 48.9
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 2.9e-43 180.3 265 45.3
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 2.9e-43 180.3 265 45.3
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 4.9e-43 179.5 265 44.9
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 8.3e-43 178.7 265 50.2
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 8.3e-43 178.7 263 45.6
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 8.3e-43 178.7 270 57.8
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-42 178.3 245 54.7
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 1.1e-42 178.3 245 54.7
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.4e-42 177.9 264 45.8
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 1.8e-42 177.6 119 70.6
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.2e-42 176.8 109 75.2
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 7.0e-42 175.6 268 59.3
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 7.0e-42 175.6 268 59.3
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 9.2e-42 175.3 110 76.4
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.2e-41 174.9 268 59.7
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 2.7e-41 173.7 272 42.6
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 3.5e-41 173.3 272 42.6
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 3.5e-41 173.3 110 74.5
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.0e-40 171.8 251 53.0
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 2.5e-39 167.2 269 51.7
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.6e-38 164.5 268 52.6
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 8.0e-38 162.2 268 57.1
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.2e-36 158.3 298 44.0
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 1.5e-36 157.9 89 80.9
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 5.2e-29 132.9 197 54.3
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 2.6e-28 130.6 190 45.3
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 9.9e-28 128.6 219 44.7
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 8.3e-27 125.6 81 74.1
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 7.1e-26 122.5 83 72.3
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 3.5e-25 120.2 198 43.4
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 3.9e-24 116.7 87 69.0
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 5.1e-24 116.3 87 67.8
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.9e-23 114.4 94 64.9
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-16 91.3 178 41.0
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 6.6e-16 89.4 46 87.0
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 6.2e-14 82.8 100 41.0
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 3.4e-12 77.0 186 46.2
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 2.5e-07 60.8 112 36.6
Cc11_g02330 Coffea canephora HOM05D005264 ORTHO05D005428 4.8e-06 56.6 105 36.2


User provided reference genes

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