Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 6.7e-99 364.0 183 100.0
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.1e-93 346.7 183 94.0
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 1.2e-92 343.2 183 93.4
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.7e-92 342.0 183 91.8
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.0e-91 340.1 183 91.3
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 5.2e-91 337.8 182 91.8
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.2e-90 336.7 183 90.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.5e-90 336.3 183 90.7
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 4.4e-90 334.7 181 90.1
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.7e-90 334.3 183 90.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 89.1
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 90.2
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 88.0
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 88.0
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 88.5
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 88.5
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 89.6
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 88.5
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 88.0
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 88.0
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 5.4e-88 327.8 181 88.4
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 87.4
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 88.5
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 88.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 88.0
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 88.0
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 87.4
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 86.9
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 87.4
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 86.3
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 3.5e-87 325.1 182 85.7
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.9
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 88.0
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.9
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 88.5
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 86.3
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 84.7
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 86.9
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 85.2
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 85.2
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 6.5e-86 320.9 182 84.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 6.5e-86 320.9 190 84.2
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 83.6
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 86.9
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 84.7
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 86.3
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 86.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.7
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.7
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 85.2
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.7
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 85.2
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 85.2
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 85.8
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 85.8
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 83.1
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 83.1
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.6e-84 316.2 182 82.4
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.6
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.1
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.6
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 83.6
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 8.0e-84 313.9 181 85.1
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 83.1
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 83.1
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 83.6
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 81.4
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.1
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.1
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.1
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 83.6
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 84.2
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 5.2e-83 311.2 181 84.5
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 5.2e-83 311.2 182 84.1
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 83.6
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.5
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 80.9
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 82.5
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 80.9
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 82.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.4e-82 308.1 179 83.2
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 83.6
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 7.5e-82 307.4 179 82.7
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 81.8
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 82.3
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 82.3
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 82.3
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 82.3
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 82.3
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 81.2
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 8.3e-81 303.9 179 82.7
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-80 303.5 181 80.7
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.4e-80 303.1 182 83.0
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 80.1
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.7
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.1
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-79 300.1 184 79.3
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 81.4
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.6e-79 299.7 183 79.8
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.5e-79 298.5 179 82.1
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 3.5e-79 298.5 184 79.9
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 80.9
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 3.5e-79 298.5 184 79.9
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.3e-78 296.6 179 81.6
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.7e-78 296.2 184 78.3
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 2.9e-78 295.4 179 80.4
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 6.6e-78 294.3 228 67.5
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.5e-77 293.1 183 79.8
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 3.3e-77 292.0 179 81.0
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 7.3e-77 290.8 183 79.2
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 7.3e-77 290.8 184 77.2
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.0e-75 287.0 183 76.5
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 6.8e-75 284.3 219 68.0
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 9.8e-74 280.4 185 75.7
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.9e-73 278.9 183 70.5
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.8e-72 276.2 182 73.6
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 7.0e-72 274.2 183 70.5
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 4.6e-71 271.6 155 83.2
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.0e-70 270.4 152 85.5
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.0e-70 270.4 183 68.9
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 2.3e-70 269.2 183 76.0
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.3e-70 269.2 183 76.5
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 5.0e-70 268.1 184 67.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.3e-69 265.0 155 83.2
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 4.0e-67 258.5 152 84.2
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 4.4e-66 255.0 181 72.4
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.2e-65 252.7 188 71.8
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 9.2e-64 247.3 181 64.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 3.0e-62 242.3 181 67.4
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 4.3e-61 238.4 136 83.8
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.2e-58 230.3 183 65.6
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 8.3e-57 224.2 183 66.1
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 2.1e-55 219.5 138 75.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 5.1e-54 214.9 155 70.3
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.3e-53 211.8 179 65.4
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.1e-52 209.5 175 61.7
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.0e-50 203.0 152 65.1
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.7e-49 199.9 158 62.7
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.4e-48 196.1 149 65.8
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 3.5e-47 192.2 102 91.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 3.9e-46 188.7 123 74.8
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 4.3e-45 185.3 186 48.9
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.2e-44 183.7 100 87.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.1e-44 181.0 100 88.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.1e-43 180.6 99 86.9
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 2.0e-42 176.4 146 60.3
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 3.4e-42 175.6 158 57.6
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 7.1e-40 167.9 106 76.4
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.9e-38 162.2 134 62.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.5e-34 150.2 115 65.2
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 2.6e-34 149.4 81 88.9
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 4.2e-32 142.1 99 68.7
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.5e-29 133.7 78 82.1
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.4e-29 131.3 81 76.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.0e-26 123.2 101 61.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 4.2e-24 115.5 106 55.7
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-19 100.9 68 63.2
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 9.0e-19 97.8 106 54.7
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.5e-18 97.1 52 90.4
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 7.1e-16 88.2 127 46.5
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-07 60.8 121 37.2
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-07 60.5 81 44.4
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 6.1e-07 58.5 140 24.3
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 1.4e-06 57.4 98 34.7
CAN.G1207.11 Capsicum annuum HOM05D001645 ORTHO05D001749 3.9e-06 55.8 124 29.0
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 5.1e-06 55.5 37 64.9
CAN.G150.3 Capsicum annuum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Cc07_g03270 Coffea canephora HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 33.0
Lju41A19G28 Lonicera japonica HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Nitab4.5_0000141g0280 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Nitab4.5_0000703g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Nitab4.5_0000703g0020 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Nitab4.5_0003566g0020 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Nitab4.5_0004485g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Nitab4.5_0013997g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Peaxi162Scf00432g00043 Petunia axillaris HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Peaxi162Scf00541g00629 Petunia axillaris HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 32.0
Migut.E00104 Erythranthe guttata HOM05D001645 ORTHO05D001749 8.8e-06 54.7 105 29.5
GSVIVG01020020001 Vitis vinifera HOM05D001645 ORTHO05D001749 8.8e-06 54.7 160 23.8


User provided reference genes

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