Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1755F.1_g300980 Hydrangea macrophylla HOM05D002263 ORTHO05D013693 3.3e-104 381.7 194 100.0
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.5e-51 206.8 213 54.5
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 4.3e-51 205.3 218 51.8
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 7.3e-51 204.5 218 52.8
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.2e-50 203.8 206 54.9
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.2e-50 203.8 206 52.9
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.8e-50 202.6 206 53.4
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.2e-48 197.2 206 52.9
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 2.0e-48 196.4 206 51.9
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 9.8e-48 194.1 217 49.3
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.7e-47 193.4 198 51.0
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.7e-47 193.4 198 51.0
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.7e-47 193.4 194 54.6
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 2.4e-46 189.5 220 47.3
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 4.1e-46 188.7 205 49.3
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 2.7e-45 186.0 207 50.7
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 2.7e-45 186.0 199 50.8
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 7.8e-45 184.5 218 48.2
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.0e-44 184.1 215 46.0
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 1.3e-44 183.7 215 46.0
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 1.7e-44 183.3 217 45.6
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.3e-44 183.0 215 46.0
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 3.0e-44 182.6 220 45.0
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 6.6e-44 181.4 220 44.5
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.1e-43 180.6 217 45.2
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 1.1e-43 180.6 217 45.2
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 9.5e-43 177.6 205 46.8
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 1.6e-42 176.8 217 44.7
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 1.6e-42 176.8 215 46.0
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 2.1e-42 176.4 205 47.3
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 2.1e-42 176.4 218 45.4
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 3.6e-42 175.6 208 48.1
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 6.2e-42 174.9 207 46.9
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.0e-41 174.1 207 45.4
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 6.8e-41 171.4 205 45.4
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 6.8e-41 171.4 241 43.2
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 1.5e-40 170.2 206 45.1
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 2.0e-40 169.9 202 47.5
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.0e-40 169.9 198 49.0
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 2.6e-40 169.5 219 44.7
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 3.4e-40 169.1 205 46.3
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 5.8e-40 168.3 213 46.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 7.5e-40 167.9 213 46.0
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.2e-39 166.4 217 45.6
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 2.2e-39 166.4 213 46.0
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 2.2e-39 166.4 213 46.0
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.9e-39 166.0 205 45.4
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 3.7e-39 165.6 221 43.4
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 3.7e-39 165.6 205 44.4
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 4.9e-39 165.2 181 48.6
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 8.3e-39 164.5 214 45.3
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.4e-38 163.7 221 41.6
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 2.4e-38 162.9 222 43.2
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 2.4e-38 162.9 217 43.3
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.2e-38 162.5 217 43.3
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 4.1e-38 162.2 213 45.5
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 4.1e-38 162.2 216 42.6
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.1e-38 162.2 221 41.2
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.1e-38 162.2 221 41.2
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 7.0e-38 161.4 213 45.5
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 7.0e-38 161.4 213 45.5
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 9.2e-38 161.0 211 46.4
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 1.2e-37 160.6 216 43.5
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 1.6e-37 160.2 213 44.6
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 2.0e-37 159.8 212 46.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.7e-37 159.5 205 43.4
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 2.7e-37 159.5 213 45.5
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 3.5e-37 159.1 205 42.9
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 3.5e-37 159.1 216 42.1
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 4.6e-37 158.7 198 42.4
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.6e-37 158.7 206 46.1
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.6e-37 158.7 206 46.1
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.6e-37 158.7 206 46.1
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 7.8e-37 157.9 205 41.0
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 7.8e-37 157.9 206 45.6
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 1.3e-36 157.1 205 42.0
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 1.3e-36 157.1 205 42.0
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.3e-36 157.1 205 42.0
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.3e-36 156.4 206 45.6
Lj4A284T34 Lonicera japonica HOM05D002263 ORTHO05D013693 2.3e-36 156.4 151 51.7
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 3.0e-36 156.0 203 42.9
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 5.0e-36 155.2 205 42.4
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 6.6e-36 154.8 180 44.4
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 6.6e-36 154.8 180 44.4
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 8.6e-36 154.5 211 45.0
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 8.6e-36 154.5 214 44.4
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 8.6e-36 154.5 212 45.3
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.5e-35 153.7 211 45.0
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.5e-35 153.7 197 43.1
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 2.5e-35 152.9 211 43.1
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 2.5e-35 152.9 214 43.9
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 5.6e-35 151.8 206 43.7
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 7.3e-35 151.4 180 45.6
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 7.3e-35 151.4 234 39.3
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 9.5e-35 151.0 216 42.1
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 9.5e-35 151.0 224 38.8
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 3.6e-34 149.1 215 41.4
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 1.8e-33 146.7 213 42.3
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.8e-33 146.7 206 43.2
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.3e-33 146.4 219 40.2
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 3.1e-33 146.0 218 41.7
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 8.9e-33 144.4 206 40.8
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.2e-32 144.1 205 41.0
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 2.0e-32 143.3 209 39.7
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 2.6e-32 142.9 176 48.9
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 5.4e-30 135.2 222 35.6
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 1.6e-29 133.7 220 40.5
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 3.5e-29 132.5 199 42.2
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.3e-28 130.6 208 38.0
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.3e-28 129.8 225 35.1
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 2.3e-28 129.8 160 44.4
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 3.0e-28 129.4 206 39.3
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 3.0e-28 129.4 199 41.2
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 6.6e-28 128.3 193 40.9
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 6.6e-28 128.3 206 38.8
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 8.6e-28 127.9 206 38.3
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 4.3e-27 125.6 178 42.7
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 4.3e-27 125.6 106 58.5
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 9.5e-27 124.4 206 37.4
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-26 124.0 206 37.4
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 6.2e-26 121.7 206 36.9
Nn1g07152 Nelumbo nucifera HOM05D002263 ORTHO05D003537 8.1e-26 121.3 137 50.4
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 8.1e-26 121.3 168 43.5
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 1.1e-25 120.9 242 34.7
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 1.8e-25 120.2 206 37.9
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.8e-25 120.2 204 37.3
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 1.8e-25 120.2 206 36.9
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 2.3e-25 119.8 206 36.4
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 2.3e-25 119.8 204 36.8
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 3.1e-25 119.4 181 40.3
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.2e-25 118.6 235 34.0
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 5.2e-25 118.6 163 44.8
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 5.2e-25 118.6 206 36.4
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 8.9e-25 117.9 108 55.6
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.0e-24 116.7 207 37.2
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 3.4e-24 115.9 215 35.3
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.7e-23 113.6 201 35.3
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 2.2e-23 113.2 206 35.9
RcHm_v2.0_Chr1g0380651 Rosa chinensis HOM05D002263 ORTHO05D003537 3.2e-22 109.4 179 40.2
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 1.2e-21 107.5 181 34.3
A03p58620 Brassica napus HOM05D002263 ORTHO05D013693 3.5e-21 105.9 102 48.0
BraA03t14922Z Brassica rapa HOM05D002263 ORTHO05D013693 3.5e-21 105.9 102 48.0
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 7.8e-21 104.8 178 34.8
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.3e-20 104.0 138 45.7
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 1.3e-20 104.0 182 37.4
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.0e-20 102.8 198 38.9
A03p58560 Brassica napus HOM05D002263 ORTHO05D013693 6.6e-20 101.7 102 49.0
BraA03t14916Z Brassica rapa HOM05D002263 ORTHO05D013693 8.6e-20 101.3 102 49.0
QL04p008053 Quercus lobata HOM05D002263 ORTHO05D003537 7.3e-19 98.2 94 48.9
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 2.6e-16 89.7 192 33.3
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 3.4e-16 89.4 62 64.5
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 1.7e-15 87.0 179 33.5
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 1.9e-14 83.6 181 31.5
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 5.4e-14 82.0 181 32.0
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 5.4e-14 82.0 181 32.0
Lj4A282G40 Lonicera japonica HOM05D002263 ORTHO05D003537 5.4e-14 82.0 69 53.6
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 7.1e-14 81.6 181 32.0
SEGI_14036 Sequoiadendron giganteum HOM05D002263 ORTHO05D013693 9.3e-14 81.3 69 53.6
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.7e-13 79.7 65 60.0
QL10p065355 Quercus lobata HOM05D002263 ORTHO05D029945 3.9e-12 75.9 53 64.2
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 1.5e-11 73.9 170 31.8
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.5e-11 73.2 180 32.2
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 6.2e-10 68.6 105 41.0
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 1.1e-09 67.8 154 31.2
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 1.1e-09 67.8 78 50.0
MBI05_g27107_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 4.0e-09 65.9 90 45.6
SHI19944 Sapria himalayana HOM05D002263 ORTHO05D003537 5.3e-09 65.5 68 52.9
FvH4_3g01730 Fragaria vesca HOM05D002263 ORTHO05D003537 6.9e-09 65.1 107 34.6
C03p05160 Brassica napus HOM05D002263 ORTHO05D003537 1.2e-08 64.3 104 37.5
SEGI_12910 Sequoiadendron giganteum HOM05D002263 ORTHO05D013693 1.2e-08 64.3 47 61.7
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 7.6e-08 61.6 114 37.7
AL3G19320 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.2e-07 60.1 85 41.2
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 2.2e-07 60.1 164 30.5
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 4.9e-07 58.9 176 30.1
MD09G1237200 Malus domestica HOM05D002263 ORTHO05D013693 3.2e-06 56.2 59 47.5


User provided reference genes

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