Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0216F.1_g091210 Hydrangea macrophylla HOM05D002485 ORTHO05D002629 2.4e-75 285.4 145 100.0
Hma1.2p1_0645F.1_g194830 Hydrangea macrophylla HOM05D002485 ORTHO05D002629 2.4e-51 205.7 107 95.3
TAR629G0963 Trochodendron aralioides HOM05D002485 ORTHO05D002629 1.3e-41 173.3 107 82.2
Lj7C8T13 Lonicera japonica HOM05D002485 ORTHO05D002629 4.5e-37 158.3 107 75.7
Lsat_1_v5_gn_7_74860 Lactuca sativa HOM05D002485 ORTHO05D002629 9.9e-37 157.1 108 73.1
CSS0045914 Camellia sinensis var. sinensis HOM05D002485 ORTHO05D002629 2.2e-36 156.0 107 72.9
vmacro13985 Vaccinium macrocarpon HOM05D002485 ORTHO05D002629 4.9e-36 154.8 107 73.8
PGR031G0557 Punica granatum HOM05D002485 ORTHO05D002629 8.4e-36 154.1 109 70.6
GSVIVG01019058001 Vitis vinifera HOM05D002485 ORTHO05D002629 1.1e-35 153.7 105 78.1
GSVIVG01019439001 Vitis vinifera HOM05D002485 ORTHO05D002629 1.1e-35 153.7 105 78.1
Rhsim07G0086400 Rhododendron simsii HOM05D002485 ORTHO05D002629 1.4e-35 153.3 107 73.8
ECA234G1159 Erigeron canadensis HOM05D000431 ORTHO05D000364 5.4e-35 151.4 107 74.8
HanXRQChr03g0066371 Helianthus annuus HOM05D002485 ORTHO05D002629 3.5e-34 148.7 103 73.8
Phvul.001G115600 Phaseolus vulgaris HOM05D002485 ORTHO05D002629 6.7e-33 144.4 111 67.6
CANSAT56G2344 Cannabis sativa HOM05D002485 ORTHO05D002629 1.5e-32 143.3 109 70.6
CiPaw.09G168400 Carya illinoinensis HOM05D002485 ORTHO05D002629 3.3e-32 142.1 140 57.9
TWI15G0639 Tripterygium wilfordii HOM05D002485 ORTHO05D002629 4.3e-32 141.7 112 67.0
Dinv38891 Davidia involucrata HOM05D002485 ORTHO05D002629 5.6e-32 141.4 89 77.5
Oeu042368.1 Olea europaea HOM05D002485 ORTHO05D002629 5.6e-32 141.4 110 72.7
Sed0004945 Sechium edule HOM05D002485 ORTHO05D002629 7.4e-32 141.0 103 68.9
AL7G29750 Arabidopsis lyrata HOM05D002485 ORTHO05D002629 1.3e-31 140.2 105 67.6
Peaxi162Scf00515g00128 Petunia axillaris HOM05D002485 ORTHO05D002629 1.3e-31 140.2 109 72.5
arahy.Tifrunner.gnm1.ann1.7AP800 Arachis hypogaea HOM05D002485 ORTHO05D002629 1.6e-31 139.8 108 72.2
VMungo1383G0365 Vigna mungo HOM05D002485 ORTHO05D002629 1.6e-31 139.8 109 67.0
AT4G23620 Arabidopsis thaliana HOM05D002485 ORTHO05D002629 2.1e-31 139.4 105 67.6
DCAR_000640 Daucus carota HOM05D002485 ORTHO05D002629 2.1e-31 139.4 94 75.5
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 2.8e-31 139.0 105 67.6
arahy.Tifrunner.gnm1.ann1.D7E6ZG Arachis hypogaea HOM05D002485 ORTHO05D002629 4.8e-31 138.3 108 70.4
Gorai.003G184300 Gossypium raimondii HOM05D002485 ORTHO05D002629 4.8e-31 138.3 98 74.5
Haze_20433 Corylus avellana HOM05D002485 ORTHO05D002629 8.1e-31 137.5 105 66.7
Lj1g0019498 Lotus japonicus HOM05D002485 ORTHO05D002629 8.1e-31 137.5 109 68.8
Gohir.D03G175300 Gossypium hirsutum HOM05D002485 ORTHO05D002629 1.1e-30 137.1 98 73.5
Gohir.A03G000043 Gossypium hirsutum HOM05D002485 ORTHO05D002629 1.8e-30 136.3 98 73.5
Oeu059575.1 Olea europaea HOM05D002485 ORTHO05D002629 1.8e-30 136.3 113 68.1
Lalb_Chr14g0364801 Lupinus albus HOM05D002485 ORTHO05D002629 2.4e-30 136.0 112 67.9
PSO384G4895 Papaver somniferum HOM05D002485 ORTHO05D002629 4.0e-30 135.2 115 61.7
Cpa.g.sc122.9 Carica papaya HOM05D002485 ORTHO05D002629 5.3e-30 134.8 105 70.5
Ciclev10021787m.g Citrus clementina HOM05D002485 ORTHO05D002629 5.3e-30 134.8 105 65.7
PSO135G0521 Papaver somniferum HOM05D002485 ORTHO05D002629 5.3e-30 134.8 115 61.7
Carub.0007s1752 Capsella rubella HOM05D002485 ORTHO05D002629 6.9e-30 134.4 109 65.1
CARHR230980 Cardamine hirsuta HOM05D002485 ORTHO05D002629 6.9e-30 134.4 105 64.8
Aqoxy7G01579 Aquilegia oxysepala HOM05D002485 ORTHO05D002629 1.2e-29 133.7 113 62.8
COL.COLO4_16964 Corchorus olitorius HOM05D002485 ORTHO05D002629 1.2e-29 133.7 109 67.0
Hund11427 Selenicereus undatus HOM05D002485 ORTHO05D002629 1.2e-29 133.7 111 65.8
Ca_08307_v3 Cicer arietinum L. HOM05D002485 ORTHO05D002629 1.5e-29 133.3 111 68.5
Glyma.16G036900 Glycine max HOM05D002485 ORTHO05D002629 1.5e-29 133.3 106 67.0
Lalb_Chr22g0358791 Lupinus albus HOM05D002485 ORTHO05D002629 1.5e-29 133.3 111 64.0
Glyma.19G116200 Glycine max HOM05D002485 ORTHO05D002629 2.0e-29 132.9 105 68.6
Psat3g087280 Pisum sativum HOM05D002485 ORTHO05D002629 2.0e-29 132.9 111 64.9
PSO782G0236 Papaver somniferum HOM05D002485 ORTHO05D002629 2.6e-29 132.5 115 60.9
BcaC01g00488 Brassica carinata HOM05D002485 ORTHO05D002629 3.4e-29 132.1 105 64.8
BolC3t20298H Brassica oleracea HOM05D002485 ORTHO05D002629 3.4e-29 132.1 105 64.8
Duzib068G0591 Durio zibethinus HOM05D002485 ORTHO05D002629 3.4e-29 132.1 112 64.3
Thecc.03G307800 Theobroma cacao HOM05D002485 ORTHO05D002629 3.4e-29 132.1 114 62.3
BcaB03g12407 Brassica carinata HOM05D002485 ORTHO05D002629 4.5e-29 131.7 105 64.8
TAR636G1130 Trochodendron aralioides HOM05D002485 ORTHO05D002629 5.8e-29 131.3 86 73.3
BraA08t34145Z Brassica rapa HOM05D002485 ORTHO05D002629 1.3e-28 130.2 105 64.8
Migut.A00704 Erythranthe guttata HOM05D002485 ORTHO05D002629 1.3e-28 130.2 109 66.1
Medtr7g086470 Medicago truncatula HOM05D002485 ORTHO05D002629 1.7e-28 129.8 112 63.4
C03p80540 Brassica napus HOM05D002485 ORTHO05D002629 2.2e-28 129.4 105 63.8
Sp7g21540 Schrenkiella parvula HOM05D002485 ORTHO05D002629 2.2e-28 129.4 105 63.8
Sopen11g009530 Solanum pennellii HOM05D002485 ORTHO05D002629 2.2e-28 129.4 107 66.4
ATR1127G139 Amborella trichopoda HOM05D002485 ORTHO05D002629 3.8e-28 128.6 104 64.4
Prupe.1G080900 Prunus persica HOM05D002485 ORTHO05D002629 3.8e-28 128.6 105 65.7
Nitab4.5_0002074g0030 Nicotiana tabacum HOM05D002485 ORTHO05D002629 6.4e-28 127.9 108 67.6
Solyc11g018560.2 Solanum lycopersicum HOM05D002485 ORTHO05D002629 8.4e-28 127.5 107 65.4
CDE10G0677 Ceratophyllum demersum HOM05D002485 ORTHO05D002629 1.1e-27 127.1 109 63.3
CsaV3_3G040630 Cucumis sativus L. HOM05D002485 ORTHO05D002629 1.1e-27 127.1 105 64.8
PGSC0003DMG400000893 Solanum tuberosum HOM05D002485 ORTHO05D002629 1.1e-27 127.1 108 69.4
A08p21930 Brassica napus HOM05D002485 ORTHO05D002629 1.4e-27 126.7 105 63.8
MD14G1007200 Malus domestica HOM05D002485 ORTHO05D002629 1.4e-27 126.7 106 66.0
BcaNung01070 Brassica carinata HOM05D002485 ORTHO05D002629 1.9e-27 126.3 110 62.7
MD12G1010000 Malus domestica HOM05D002485 ORTHO05D002629 2.4e-27 125.9 109 67.9
MSTRG.13866 Avicennia marina HOM05D002485 ORTHO05D002629 3.2e-27 125.6 113 65.5
A01p14920 Brassica napus HOM05D002485 ORTHO05D002629 3.2e-27 125.6 88 72.7
BraA01t01433Z Brassica rapa HOM05D002485 ORTHO05D002629 3.2e-27 125.6 88 72.7
Thhalv10026041m.g Eutrema salsugineum HOM05D002485 ORTHO05D002629 3.2e-27 125.6 105 64.8
SGA_v2.0_scaffold96G29006 Striga asiatica HOM05D002485 ORTHO05D002629 3.2e-27 125.6 109 66.1
Aa31LG6G6840 Aethionema arabicum HOM05D002485 ORTHO05D002629 4.2e-27 125.2 105 62.9
Nitab4.5_0001018g0100 Nicotiana tabacum HOM05D002485 ORTHO05D002629 4.2e-27 125.2 110 65.5
BcaC09g50970 Brassica carinata HOM05D002485 ORTHO05D002629 7.1e-27 124.4 88 71.6
C01p18620 Brassica napus HOM05D002485 ORTHO05D002629 7.1e-27 124.4 88 71.6
BolC1t01790H Brassica oleracea HOM05D002485 ORTHO05D002629 7.1e-27 124.4 88 71.6
CDE04G0638 Ceratophyllum demersum HOM05D002485 ORTHO05D002629 7.1e-27 124.4 109 60.6
THA.LOC104814787 Tarenaya hassleriana HOM05D002485 ORTHO05D002629 7.1e-27 124.4 89 70.8
Sc22g0005280 Simmondsia chinensis HOM05D002485 ORTHO05D002629 9.3e-27 124.0 96 66.7
Manes.01G051500 Manihot esculenta HOM05D002485 ORTHO05D002629 1.6e-26 123.2 108 64.8
THA.LOC104806423 Tarenaya hassleriana HOM05D002485 ORTHO05D002629 1.6e-26 123.2 104 59.6
Atru.chr9.2092 Acer truncatum HOM05D002485 ORTHO05D002629 4.6e-26 121.7 109 63.3
Cc08_g15430 Coffea canephora HOM05D002485 ORTHO05D002629 6.0e-26 121.3 106 62.3
Psat7g073920 Pisum sativum HOM05D002485 ORTHO05D002629 6.0e-26 121.3 99 66.7
Prupe.1G563200 Prunus persica HOM05D002485 ORTHO05D002629 6.0e-26 121.3 104 62.5
MELO3C009795.2 Cucumis melo HOM05D002485 ORTHO05D002629 1.3e-25 120.2 105 61.9
RcHm_v2.0_Chr4g0408271 Rosa chinensis HOM05D002485 ORTHO05D002629 2.3e-25 119.4 100 63.0
SalBow1G2843 Salvia bowleyana HOM05D002485 ORTHO05D002629 3.9e-25 118.6 109 62.4
SalBow1G3970 Salvia bowleyana HOM05D002485 ORTHO05D002629 3.9e-25 118.6 109 62.4
FvH4_4g11490 Fragaria vesca HOM05D002485 ORTHO05D002629 6.7e-25 117.9 107 57.9
Zm00001eb357570 Zea mays HOM05D002485 ORTHO05D002629 6.7e-25 117.9 115 57.4
EL10Ac5g12848 Beta vulgaris HOM05D002485 ORTHO05D002629 1.5e-24 116.7 92 68.5
Eucgr.D01799 Eucalyptus grandis HOM05D002485 ORTHO05D002629 1.5e-24 116.7 74 75.7
FAN17G1958 Fragaria x ananassa HOM05D002485 ORTHO05D002629 3.3e-24 115.5 98 62.2
unitig_748.g7423 Utricularia gibba HOM05D002485 ORTHO05D002629 3.3e-24 115.5 108 61.1
Ah.07g196810 Amaranthus hybridus HOM05D002485 ORTHO05D002629 7.4e-24 114.4 111 58.6
HPP92_022952 Vanilla planifolia HOM05D001537 ORTHO05D002595 7.4e-24 114.4 114 57.0
FAN22G2077 Fragaria x ananassa HOM05D002485 ORTHO05D002629 9.6e-24 114.0 98 62.2
Os05g0270000 Oryza sativa ssp. japonica HOM05D002485 ORTHO05D002629 1.6e-23 113.2 113 54.9
Sabra01G0073200 Salix brachista HOM05D002485 ORTHO05D002629 1.6e-23 113.2 108 59.3
FAN17G0602 Fragaria x ananassa HOM05D002485 ORTHO05D002629 2.8e-23 112.5 98 61.2
SGA_v2.0_scaffold173G39121 Striga asiatica HOM05D002485 ORTHO05D002629 2.8e-23 112.5 113 59.3
ClCG10G015820 Citrullus lanatus HOM05D002485 ORTHO05D002629 1.1e-22 110.5 62 87.1
Os01g0593500 Oryza sativa ssp. japonica HOM05D002485 ORTHO05D002629 1.4e-22 110.2 74 68.9
QL03p004287 Quercus lobata HOM05D002485 ORTHO05D002629 2.4e-22 109.4 66 80.3
AUR62010767 Chenopodium quinoa HOM05D002485 ORTHO05D002629 1.2e-21 107.1 91 61.5
Sopen02g035290 Solanum pennellii HOM05D002485 ORTHO05D002629 3.4e-21 105.5 96 62.5
RcHm_v2.0_Chr4g0408291 Rosa chinensis HOM05D002485 ORTHO05D002629 5.8e-21 104.8 100 57.0
AUR62021509 Chenopodium quinoa HOM05D002485 ORTHO05D002629 1.3e-20 103.6 93 57.0
Potri.001G097801 Populus trichocarpa HOM05D002485 ORTHO05D002629 3.8e-20 102.1 77 68.8
FAN07G2448 Fragaria x ananassa HOM05D007128 ORTHO05D009059 6.5e-20 101.3 69 69.6
PGSC0003DMG400015775 Solanum tuberosum HOM05D002485 ORTHO05D002629 1.6e-18 96.7 109 57.8
CAN.G1282.2 Capsicum annuum HOM05D001199 ORTHO05D001013 2.3e-17 92.8 56 82.1
SEGI_03456 Sequoiadendron giganteum HOM05D002485 ORTHO05D002629 6.7e-17 91.3 89 57.3
SEGI_20111 Sequoiadendron giganteum HOM05D002485 ORTHO05D002629 6.7e-17 91.3 89 57.3
TPR.G17870 Trifolium pratense HOM05D002485 ORTHO05D002629 8.7e-17 90.9 87 58.6
Lju237C1G18 Lonicera japonica HOM05D002485 ORTHO05D002629 1.9e-16 89.7 106 50.9
SalBow1G7441 Salvia bowleyana HOM05D000011 ORTHO05D002629 4.8e-15 85.1 52 78.8
SalBow4G2402 Salvia bowleyana HOM05D002485 ORTHO05D002629 8.2e-15 84.3 55 72.7
Pp3c24_15540 Physcomitrium patens HOM05D002485 ORTHO05D002629 5.3e-14 81.6 107 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1117 Anthoceros agrestis HOM05D002485 ORTHO05D002629 6.5e-12 74.7 63 58.7
RcHm_v2.0_Chr4g0439531 Rosa chinensis HOM05D002485 ORTHO05D002629 6.5e-12 74.7 79 49.4
RcHm_v2.0_Chr5g0044961 Rosa chinensis HOM05D002485 ORTHO05D002629 1.2e-10 70.5 79 48.1
Hma1.2p1_0774F.1_g216320 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-10 70.1 39 92.3
SalBow7G2385 Salvia bowleyana HOM05D001475 ORTHO05D016858 3.6e-10 68.9 45 75.6
Psat5g120080 Pisum sativum HOM05D002485 ORTHO05D002629 6.1e-10 68.2 111 44.1
Mapoly0078s0022 Marchantia polymorpha HOM05D002485 ORTHO05D002629 2.5e-08 62.8 61 54.1
SMO118G0528 Selaginella moellendorffii HOM05D002485 ORTHO05D002629 5.3e-06 55.1 90 34.4
CBR_g4269 Chara braunii HOM05D002485 ORTHO05D000353 6.9e-06 54.7 55 49.1
Solyc02g090647.1 Solanum lycopersicum HOM05D002485 ORTHO05D002629 6.9e-06 54.7 47 57.4


User provided reference genes

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