Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 8.2e-221 770.0 369 100.0
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 7.1e-148 527.7 373 71.6
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 2.0e-142 509.6 392 66.1
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 1.3e-133 480.3 400 63.0
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.1e-132 477.2 390 60.8
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 1.4e-132 476.9 390 62.1
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 3.2e-132 475.7 380 63.9
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 1.8e-130 469.9 385 62.3
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 2.2e-128 463.0 390 59.7
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 3.1e-127 459.1 372 64.8
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 5.9e-126 454.9 420 56.9
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 1.7e-125 453.4 390 61.8
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 2.2e-125 453.0 390 58.2
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 1.4e-124 450.3 393 61.1
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 1.5e-121 440.3 372 59.9
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 3.3e-121 439.1 390 56.2
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 2.4e-119 433.0 384 58.1
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.1e-119 432.6 393 57.5
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 3.1e-119 432.6 369 59.9
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 6.9e-119 431.4 372 59.4
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 2.0e-118 429.9 386 59.1
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 2.0e-118 429.9 393 57.3
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 5.9e-118 428.3 370 58.6
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 7.7e-118 427.9 379 59.9
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 1.3e-117 427.2 374 59.1
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 1.4e-116 423.7 393 56.0
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 1.4e-116 423.7 395 57.0
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 3.6e-115 419.1 393 56.0
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 6.1e-115 418.3 391 56.0
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 1.8e-114 416.8 405 55.3
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 3.0e-114 416.0 525 45.3
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 3.0e-114 416.0 384 56.5
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 2.6e-113 412.9 382 56.0
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 2.8e-112 409.5 373 57.1
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 4.1e-111 405.6 386 54.1
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 1.2e-110 404.1 386 56.0
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 4.5e-110 402.1 387 55.6
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 1.3e-109 400.6 392 53.8
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 2.2e-109 399.8 375 55.5
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 3.8e-109 399.1 386 54.9
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 1.4e-108 397.1 389 53.5
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 5.5e-108 395.2 393 53.7
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 7.2e-108 394.8 390 53.6
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 2.1e-107 393.3 393 53.9
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 8.0e-107 391.3 374 52.4
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 2.3e-106 389.8 374 54.8
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 3.9e-106 389.0 393 50.4
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 8.8e-106 387.9 378 54.2
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 1.3e-104 384.0 373 52.5
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.3e-104 384.0 393 50.1
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 2.2e-104 383.3 383 53.3
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 6.3e-104 381.7 392 50.3
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 6.3e-104 381.7 390 51.8
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 7.0e-103 378.3 388 51.5
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 1.2e-102 377.5 386 53.4
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 2.6e-102 376.3 379 52.8
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 2.6e-102 376.3 378 52.1
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 7.7e-102 374.8 393 49.1
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 2.2e-101 373.2 383 51.7
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 5.0e-101 372.1 385 49.4
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 8.5e-101 371.3 390 53.3
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 1.1e-100 370.9 392 48.7
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 3.2e-100 369.4 392 48.7
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 9.4e-100 367.9 389 48.6
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 1.2e-99 367.5 387 49.4
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 2.1e-99 366.7 387 49.1
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 2.1e-99 366.7 389 52.2
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 2.7e-99 366.3 389 51.9
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 2.7e-99 366.3 388 48.7
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 6.1e-99 365.2 387 53.2
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 6.8e-98 361.7 391 48.3
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 8.8e-98 361.3 386 48.2
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 1.5e-97 360.5 333 55.3
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 3.4e-97 359.4 383 52.7
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 4.4e-97 359.0 386 53.4
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 1.3e-96 357.5 374 48.9
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 2.2e-96 356.7 383 50.7
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 8.3e-96 354.8 392 46.7
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 2.4e-95 353.2 371 51.2
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 4.1e-95 352.4 385 48.6
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 9.1e-95 351.3 386 52.6
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 1.2e-94 350.9 396 46.7
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.6e-94 350.5 395 46.3
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 4.5e-94 349.0 429 45.9
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 3.6e-91 339.3 391 48.3
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 1.2e-89 334.3 375 48.5
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.5e-89 334.0 385 46.5
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 2.2e-88 330.1 420 43.1
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 8.3e-88 328.2 422 42.9
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 9.1e-87 324.7 382 45.3
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 3.5e-86 322.8 361 46.8
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 1.3e-85 320.9 361 46.5
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 1.1e-84 317.8 361 46.3
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 4.2e-84 315.8 329 53.2
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 1.6e-83 313.9 361 45.4
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 2.1e-83 313.5 361 46.0
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 1.4e-82 310.8 386 44.6
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.6e-81 306.6 361 45.4
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 3.4e-81 306.2 361 45.4
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 3.4e-81 306.2 361 45.7
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 4.4e-81 305.8 356 46.6
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 1.7e-80 303.9 356 46.6
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 1.7e-80 303.9 356 46.6
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 1.7e-80 303.9 356 46.6
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 1.7e-80 303.9 361 47.1
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 2.8e-80 303.1 356 46.3
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 3.7e-80 302.8 358 44.7
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.7e-77 293.9 363 44.1
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 2.9e-77 293.1 364 44.5
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 8.3e-72 275.0 362 43.4
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 1.1e-71 274.6 394 41.4
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 1.7e-64 250.8 390 40.8
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 4.4e-57 226.1 326 39.9
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 4.9e-56 222.6 219 56.2
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 4.9e-56 222.6 257 45.9
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 3.0e-53 213.4 305 41.6
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 5.2e-50 202.6 253 45.1
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 8.9e-50 201.8 315 38.7
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 2.6e-49 200.3 306 39.9
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 3.4e-49 199.9 305 39.0
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 2.2e-48 197.2 251 45.0
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 1.5e-44 184.5 345 36.5
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 5.3e-42 176.0 118 70.3
Actinidia23072 Actinidia chinensis HOM05D004094 ORTHO05D004601 3.2e-31 140.2 134 56.0
BraA02t07168Z Brassica rapa HOM05D004094 ORTHO05D004601 2.1e-30 137.5 120 53.3
BolC2t09507H Brassica oleracea HOM05D004094 ORTHO05D004601 3.7e-27 126.7 117 52.1
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 7.9e-22 109.0 247 32.8
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 1.6e-19 101.3 229 34.1
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 4.8e-19 99.8 111 42.3
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 1.4e-18 98.2 105 46.7
TPR.G11472 Trifolium pratense HOM05D004094 ORTHO05D004601 1.8e-18 97.8 96 50.0
MBI03_g47843_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 3.8e-16 90.1 99 47.5
MBI03_g47842_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 1.1e-15 88.6 97 50.5
TWI77G0135 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.2e-14 85.1 100 46.0
SEGI_20546 Sequoiadendron giganteum HOM05D004094 ORTHO05D004601 1.6e-14 84.7 110 40.0
Cfa014854 Carpinus fangiana HOM05D000997 ORTHO05D004601 2.1e-14 84.3 68 61.8
TPR.G23323 Trifolium pratense HOM05D004094 ORTHO05D004601 2.7e-14 84.0 122 36.9
CDE05G0645 Ceratophyllum demersum HOM05D004977 ORTHO05D006454 1.3e-13 81.6 289 25.3
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 1.8e-13 81.3 305 23.3
Eucgr.J00591 Eucalyptus grandis HOM05D004977 ORTHO05D006454 3.9e-13 80.1 290 25.9
VMungo0647G0510 Vigna mungo HOM05D004094 ORTHO05D004601 1.5e-12 78.2 57 56.1
CANSAT25G3123 Cannabis sativa HOM05D004977 ORTHO05D006454 4.3e-12 76.6 284 23.2
PRCOL_00006813 Prasinoderma coloniale HOM05D004977 ORTHO05D006454 9.7e-12 75.5 313 23.3
TWI36G0013 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.3e-11 75.1 58 53.4
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 1.6e-11 74.7 287 25.1
Os11g0572100 Oryza sativa ssp. japonica HOM05D004977 ORTHO05D006454 1.6e-11 74.7 299 22.7
Zm00001eb114240 Zea mays HOM05D004977 ORTHO05D006454 3.7e-11 73.6 299 23.4
AUR62003055 Chenopodium quinoa HOM05D004977 ORTHO05D006454 4.8e-11 73.2 294 23.5
Potri.001G213900 Populus trichocarpa HOM05D004977 ORTHO05D006454 4.8e-11 73.2 285 24.2
AagrBONN_evm.TU.Sc2ySwM_228.1947 Anthoceros agrestis HOM05D004977 ORTHO05D006454 6.3e-11 72.8 289 25.3
TPR.G3495 Trifolium pratense HOM05D004094 ORTHO05D004601 6.3e-11 72.8 53 56.6
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 8.2e-11 72.4 284 24.6
Cfa003011 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.1e-10 72.0 51 58.8
Hund25154 Selenicereus undatus HOM05D004977 ORTHO05D006454 1.4e-10 71.6 284 23.2
Aa31LG1G13410 Aethionema arabicum HOM05D004977 ORTHO05D006454 1.8e-10 71.2 284 22.5
MCO16G356 Micromonas commoda HOM05D004977 ORTHO05D006454 1.8e-10 71.2 290 23.1
Lj7A339G40 Lonicera japonica HOM05D004094 ORTHO05D004601 2.4e-10 70.9 53 62.3
Cfa008660 Carpinus fangiana HOM05D004094 ORTHO05D004601 4.1e-10 70.1 51 56.9
Cfa025270 Carpinus fangiana HOM05D004977 ORTHO05D006454 5.3e-10 69.7 293 21.8
AUR62007869 Chenopodium quinoa HOM05D004977 ORTHO05D006454 5.3e-10 69.7 294 22.4
BolC8t46953H Brassica oleracea HOM05D004618 ORTHO05D005318 7.7e-09 65.9 305 22.6
Lj2C831G4 Lonicera japonica HOM05D004977 ORTHO05D006454 1.3e-08 65.1 284 24.6
C08p01440 Brassica napus HOM05D004618 ORTHO05D005318 1.7e-08 64.7 305 20.3
Cfa027206 Carpinus fangiana HOM05D004618 ORTHO05D005318 2.9e-08 63.9 118 28.0
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 5.0e-08 63.2 289 21.5
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 1.1e-07 62.0 301 20.6
Cre07.g347550 Chlamydomonas reinhardtii HOM05D004094 ORTHO05D004601 4.2e-07 60.1 167 28.1
AagrBONN_evm.TU.Sc2ySwM_228.5703 Anthoceros agrestis HOM05D004618 ORTHO05D005318 1.2e-06 58.5 229 24.9
SHI23041 Sapria himalayana HOM05D004094 ORTHO05D004601 1.2e-06 58.5 52 50.0
Atru.chr4.1755 Acer truncatum HOM05D004618 ORTHO05D005318 1.6e-06 58.2 266 20.7
Lj6g0012936 Lotus japonicus HOM05D004618 ORTHO05D005318 1.6e-06 58.2 254 24.4
Os03g0264800 Oryza sativa ssp. japonica HOM05D004618 ORTHO05D005318 1.6e-06 58.2 218 23.9
BolC5t29073H Brassica oleracea HOM05D004618 ORTHO05D005318 2.1e-06 57.8 221 24.4
Lsat_1_v5_gn_1_72241 Lactuca sativa HOM05D004618 ORTHO05D005318 2.1e-06 57.8 331 20.5
SHI23045 Sapria himalayana HOM05D004094 ORTHO05D004601 2.1e-06 57.8 43 55.8
Manes.15G051466 Manihot esculenta HOM05D004618 ORTHO05D005318 3.6e-06 57.0 222 22.1
Prupe.3G316000 Prunus persica HOM05D004618 ORTHO05D005318 6.1e-06 56.2 249 22.9
Sabra04G0149200 Salix brachista HOM05D004977 ORTHO05D006454 6.1e-06 56.2 110 30.9
GSVIVG01003592001 Vitis vinifera HOM05D004618 ORTHO05D005318 6.1e-06 56.2 224 22.8
Sp1g03570 Schrenkiella parvula HOM05D004618 ORTHO05D005318 7.9e-06 55.8 221 24.4


User provided reference genes

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