Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.1e-229 799.7 418 100.0
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.5e-178 629.8 425 76.2
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.4e-176 622.5 347 86.2
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 3.1e-176 622.1 341 87.4
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.0e-174 617.1 341 86.8
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 5.0e-174 614.8 419 73.3
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.5e-173 613.2 338 85.2
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 3.2e-173 612.1 340 85.6
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 3.2e-173 612.1 340 85.6
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 5.5e-173 611.3 418 75.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.2e-172 610.1 344 85.2
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.1e-172 607.8 417 74.8
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.0e-171 607.1 414 74.4
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.8e-171 606.3 405 75.1
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 3.0e-171 605.5 341 84.8
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 3.0e-171 605.5 343 84.3
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 3.0e-171 605.5 348 82.5
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.0e-171 605.5 340 85.0
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.0e-171 605.1 411 74.7
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 5.2e-171 604.7 340 85.3
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 6.8e-171 604.4 351 82.6
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.8e-171 604.4 340 84.1
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 8.8e-171 604.0 340 85.0
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 8.8e-171 604.0 395 75.4
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 8.8e-171 604.0 343 84.8
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.5e-170 603.2 340 85.0
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.5e-170 603.2 346 82.9
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.0e-170 602.8 403 74.7
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 2.6e-170 602.4 339 84.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 2.6e-170 602.4 341 82.7
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 3.4e-170 602.1 341 84.5
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.4e-170 602.1 396 75.5
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 3.4e-170 602.1 341 85.0
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.7e-170 601.3 349 84.0
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 5.7e-170 601.3 341 83.3
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 5.7e-170 601.3 342 84.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 5.7e-170 601.3 377 78.5
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 7.5e-170 600.9 340 84.1
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 7.5e-170 600.9 342 83.9
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.3e-169 600.1 340 84.4
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.7e-169 599.7 340 84.7
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.7e-169 599.7 342 84.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.7e-169 599.7 339 82.6
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.8e-169 599.0 341 82.7
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 2.8e-169 599.0 341 83.9
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 3.7e-169 598.6 427 70.5
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 6.3e-169 597.8 373 78.8
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 8.3e-169 597.4 340 84.1
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.1e-168 597.0 419 70.9
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.4e-168 596.7 345 82.3
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.4e-168 596.7 341 83.0
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.8e-168 596.3 342 83.9
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.4e-168 595.9 340 83.5
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 3.1e-168 595.5 341 83.6
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.1e-168 595.5 341 83.6
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.1e-168 595.5 341 83.6
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 3.1e-168 595.5 344 82.8
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.1e-168 595.5 340 83.5
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 3.1e-168 595.5 403 73.9
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 4.1e-168 595.1 342 83.0
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 4.1e-168 595.1 410 72.7
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 4.1e-168 595.1 341 82.1
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 4.1e-168 595.1 340 84.1
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 5.4e-168 594.7 340 83.2
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 9.2e-168 594.0 340 83.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 9.2e-168 594.0 340 83.5
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.2e-168 594.0 341 83.3
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.2e-167 593.6 420 71.4
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-167 593.6 340 83.2
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-167 593.6 422 71.8
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.7e-167 592.4 340 82.9
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.7e-167 592.4 341 83.0
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.7e-167 592.4 430 70.9
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.5e-167 592.0 341 82.7
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 5.9e-167 591.3 411 73.5
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.3e-166 590.1 341 82.4
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.3e-166 590.1 422 71.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.3e-166 590.1 345 82.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.7e-166 589.7 341 82.4
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.7e-166 589.7 417 72.4
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 3.8e-166 588.6 341 82.1
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.6e-166 587.8 343 82.2
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 6.6e-166 587.8 340 81.2
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 8.6e-166 587.4 343 82.2
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.1e-165 587.0 345 81.4
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.9e-165 586.3 340 82.4
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.9e-165 586.3 340 82.4
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.9e-165 586.3 340 82.4
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 4.3e-165 585.1 345 82.0
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 7.3e-165 584.3 340 82.4
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.6e-164 583.2 347 79.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 2.8e-164 582.4 341 81.5
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 3.6e-164 582.0 337 82.5
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 6.8e-163 577.8 340 80.0
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 6.8e-163 577.8 317 86.4
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.0e-162 576.2 308 88.0
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.6e-159 566.6 318 84.9
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 4.6e-159 565.1 345 79.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 3.3e-157 558.9 319 84.3
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 5.6e-157 558.1 309 85.1
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.5e-157 557.4 301 86.4
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 9.5e-157 557.4 349 77.1
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.2e-156 557.0 319 83.1
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.1e-156 556.2 340 77.6
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.8e-156 555.8 356 77.5
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 4.7e-156 555.1 319 83.4
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.4e-155 553.5 319 82.8
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.4e-155 553.5 347 77.8
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.9e-155 550.8 319 82.1
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.7e-153 545.4 565 54.5
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 7.0e-152 541.2 500 58.0
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.6e-151 540.0 344 76.7
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.1e-148 529.6 551 53.0
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.8e-148 529.3 339 75.8
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.3e-147 526.2 348 71.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.2e-146 523.9 340 76.2
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.0e-146 523.1 340 75.6
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.4e-146 522.3 343 72.0
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.8e-146 521.5 346 71.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.9e-144 516.5 338 71.0
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 9.5e-141 504.2 303 77.2
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.4e-128 463.0 243 86.4
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 7.3e-125 451.4 339 65.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.1e-124 448.0 277 76.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 7.1e-120 434.9 343 67.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.9e-118 429.1 344 61.0
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 3.3e-117 426.0 307 66.8
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-109 400.2 242 78.9
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 9.3e-104 381.3 250 75.6
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 9.7e-101 371.3 212 81.6
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.3e-100 368.6 339 55.8
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.0e-98 363.6 214 80.8
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.0e-97 361.3 343 54.8
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.2e-92 341.7 214 76.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.8e-84 316.6 204 73.5
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 4.8e-84 315.8 288 52.8
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.6e-79 299.7 186 79.6
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.2e-64 248.8 320 41.9
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 9.4e-64 248.4 339 39.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 9.4e-64 248.4 342 40.6
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.6e-63 247.7 310 43.5
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.6e-61 240.4 129 86.0
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.4e-61 239.6 330 39.1
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.5e-56 224.6 319 39.8
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.2e-54 216.1 113 92.9
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.7e-53 212.6 179 63.1
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.2e-52 210.7 336 38.7
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 2.8e-47 193.7 247 40.1
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 5.4e-43 179.5 155 60.6
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.9e-27 127.9 92 71.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 3.0e-25 120.6 58 89.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.3e-24 117.1 163 45.4
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 5.4e-19 99.8 93 61.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 2.7e-18 97.4 60 80.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.1e-15 87.8 49 77.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 6.9e-14 82.8 67 67.2
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 7.6e-13 79.3 118 43.2
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.3e-12 78.6 33 93.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 3.9e-09 67.0 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 1.1e-06 58.9 31 77.4


User provided reference genes

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