Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 0.0e+00 1409.0 956 100.0
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 8.9e-235 817.8 800 67.2
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 1.9e-232 810.1 927 65.7
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 7.8e-223 778.1 788 71.2
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.2e-217 760.0 829 65.5
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 7.6e-210 734.9 941 58.7
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.4e-208 730.7 806 67.1
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 3.2e-208 729.6 916 61.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.8e-206 723.8 897 60.3
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 3.9e-206 722.6 964 59.2
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 3.1e-203 713.0 915 56.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.1e-200 704.5 936 57.5
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.2e-199 701.0 900 60.8
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 7.9e-199 698.4 910 59.0
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 2.1e-196 690.3 900 58.8
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 6.9e-195 685.3 943 57.4
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 5.8e-194 682.2 815 59.5
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.7e-193 680.6 869 52.1
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.7e-193 680.6 908 56.9
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 6.5e-193 678.7 912 59.6
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.7e-191 673.3 924 58.1
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 2.5e-189 666.8 947 59.3
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.8e-188 663.3 905 58.8
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.5e-186 657.5 913 57.3
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 3.4e-186 656.4 805 58.6
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 4.2e-184 649.4 908 57.0
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.2e-184 649.4 909 57.8
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.6e-183 647.5 804 61.7
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.8e-179 634.0 807 59.4
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 5.3e-179 632.5 910 56.7
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.2e-178 631.3 813 60.5
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 1.5e-178 630.9 807 59.6
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.0e-178 630.6 799 59.1
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 5.9e-178 629.0 791 61.9
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.7e-177 627.5 908 58.4
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-176 624.4 901 57.5
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.4e-176 624.4 964 50.1
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.4e-176 624.4 891 58.2
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.9e-176 624.0 911 56.0
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 7.2e-176 622.1 913 55.6
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 3.6e-175 619.8 812 57.1
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-174 617.8 789 60.2
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 6.7e-174 615.5 806 55.7
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 8.8e-174 615.1 945 51.7
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 7.4e-173 612.1 906 50.7
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 9.7e-173 611.7 899 55.4
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.3e-172 611.3 871 52.0
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.7e-172 610.9 807 61.3
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.3e-172 609.0 901 57.0
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.1e-171 608.2 935 52.6
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.4e-171 607.8 959 52.3
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 7.0e-171 605.5 922 51.5
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 5.9e-170 602.4 814 56.0
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 1.7e-169 600.9 809 54.3
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 6.5e-169 599.0 923 51.1
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.1e-168 598.2 804 57.2
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 6.1e-167 592.4 910 51.9
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.4e-166 591.3 814 54.9
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 8.8e-166 588.6 790 55.8
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.2e-164 583.9 789 58.7
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 2.8e-164 583.6 790 58.0
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 4.8e-164 582.8 902 53.5
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 4.8e-164 582.8 909 54.1
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 4.8e-164 582.8 942 55.3
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 8.2e-164 582.0 789 58.2
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.4e-163 580.5 803 57.5
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.2e-162 578.2 979 52.7
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.6e-162 577.0 776 60.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 5.5e-160 569.3 906 54.0
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 5.5e-160 569.3 909 50.4
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 9.4e-160 568.5 1002 51.4
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 3.4e-157 560.1 761 57.0
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 5.7e-157 559.3 934 49.0
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 5.7e-157 559.3 892 54.5
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 4.1e-155 553.1 799 55.2
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 5.9e-154 549.3 802 56.2
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.0e-153 548.5 915 49.3
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.7e-153 547.7 927 44.7
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.5e-152 544.7 811 55.9
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.2e-151 541.6 914 49.5
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 1.6e-151 541.2 779 51.6
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 5.2e-150 536.2 947 51.8
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 3.5e-146 523.5 792 55.2
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.7e-145 521.2 811 53.1
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.3e-144 516.9 899 51.5
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 9.5e-144 515.4 898 44.0
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.6e-143 514.6 901 50.8
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 8.0e-143 512.3 984 50.0
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 5.7e-141 506.1 911 50.7
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 3.7e-140 503.4 910 49.3
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 6.3e-140 502.7 750 51.5
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.4e-139 501.5 883 49.7
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 3.5e-138 496.9 928 48.6
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 7.8e-138 495.7 819 47.6
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.0e-137 495.4 909 46.9
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 6.6e-137 492.7 830 52.4
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 5.6e-136 489.6 897 49.9
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.8e-135 487.3 911 49.8
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 2.8e-135 487.3 908 48.9
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 4.0e-134 483.4 807 51.3
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 4.0e-134 483.4 800 53.9
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 8.9e-134 482.3 911 49.4
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 4.1e-131 473.4 906 48.2
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 4.1e-131 473.4 906 48.2
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.3e-129 468.4 920 45.4
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.7e-129 468.0 904 48.2
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.7e-129 468.0 879 52.1
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 2.3e-129 467.6 902 50.1
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.2e-127 461.8 918 47.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-126 458.4 900 47.9
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.2e-122 445.3 788 51.3
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 7.8e-122 442.6 908 47.4
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.3e-121 441.8 897 46.6
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 8.6e-121 439.1 625 56.8
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 9.5e-120 435.6 898 47.3
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 6.6e-113 412.9 805 48.9
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 3.4e-101 374.0 769 45.1
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 7.3e-96 356.3 834 47.6
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 6.9e-94 349.7 847 45.5
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 9.0e-94 349.4 845 47.6
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 5.6e-88 330.1 293 62.1
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 4.8e-87 327.0 733 47.5
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 5.1e-81 307.0 345 53.9
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 1.6e-79 302.0 597 51.9
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.1e-72 279.3 275 61.5
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 8.5e-68 263.1 381 47.2
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.2e-67 260.8 263 60.8
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.2e-63 248.4 808 39.0
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 9.1e-62 243.0 453 42.8
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.5e-56 225.7 234 60.3
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.8e-55 221.5 196 62.8
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.2e-53 216.1 399 41.6
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 3.0e-41 174.9 172 55.8
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-37 162.9 337 42.4
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.0e-36 159.8 138 59.4
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 8.9e-25 120.2 71 83.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 8.3e-23 113.6 72 76.4
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.0e-20 106.7 128 46.9
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 3.0e-20 105.1 70 68.6
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.2e-18 99.8 158 38.6
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 1.8e-17 95.9 209 36.4
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 5.8e-16 90.9 220 35.0
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 3.7e-15 88.2 85 48.2
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 9.2e-14 83.6 128 41.4
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.3e-12 79.0 100 39.0
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 8.1e-10 70.5 144 30.6
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.2e-07 62.4 79 53.2
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 3.7e-07 61.6 408 26.2
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.1e-06 58.2 106 40.6


User provided reference genes

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