Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 0.0e+00 1155.6 663 100.0
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 4.7e-275 951.0 674 78.5
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 7.0e-271 937.2 664 80.6
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.8e-264 915.2 664 79.5
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 2.8e-259 898.7 678 75.1
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.8e-258 896.0 664 74.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.8e-255 885.9 665 72.3
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.9e-254 880.9 665 71.9
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 3.1e-250 868.6 748 69.4
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.2e-250 867.8 656 72.6
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 4.9e-248 861.3 656 72.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.3e-244 848.6 664 71.7
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.8e-242 840.9 664 70.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.0e-241 839.3 629 74.4
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 7.1e-239 830.9 632 71.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 7.1e-239 830.9 664 69.6
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.6e-238 829.7 666 69.4
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 1.6e-238 829.7 605 73.7
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.7e-238 828.9 640 70.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.6e-238 828.2 640 70.5
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 6.6e-237 824.3 651 70.5
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.2e-235 820.1 691 66.4
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 6.2e-235 817.8 674 71.5
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.1e-234 817.0 654 68.5
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.2e-233 813.5 674 70.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.4e-233 812.0 675 71.4
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 2.2e-232 809.3 656 72.7
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 2.9e-232 808.9 670 68.4
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.4e-232 807.7 649 70.7
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 4.1e-231 805.1 674 70.8
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 7.1e-231 804.3 625 69.1
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.1e-230 802.7 674 67.2
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 4.6e-230 801.6 627 69.9
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 8.6e-229 797.3 635 71.7
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.9e-228 796.2 668 67.7
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.3e-228 795.4 643 72.0
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.6e-228 794.7 674 69.6
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.6e-227 793.1 671 68.6
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.1e-227 792.7 674 69.4
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.2e-225 786.9 626 68.1
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.5e-225 786.6 671 66.6
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 7.6e-225 784.3 680 67.4
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 7.6e-225 784.3 671 68.6
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 9.9e-225 783.9 672 68.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 3.8e-224 781.9 674 69.1
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 6.4e-224 781.2 655 66.7
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 4.2e-223 778.5 666 65.6
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 7.1e-223 777.7 673 68.5
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.2e-222 776.9 605 70.7
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.1e-222 776.2 675 64.9
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 6.0e-222 774.6 626 67.9
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.3e-221 772.7 670 68.4
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.0e-221 772.3 679 66.3
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.9e-221 771.9 632 68.4
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 6.6e-221 771.2 668 64.4
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-220 770.4 669 68.6
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.5e-220 770.0 604 67.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 4.3e-220 768.5 669 68.5
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 5.6e-220 768.1 627 67.1
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 4.8e-219 765.0 670 65.2
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.1e-218 763.8 636 69.2
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 3.1e-218 762.3 668 65.3
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 3.1e-218 762.3 670 67.5
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 4.0e-218 761.9 673 68.2
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 4.0e-218 761.9 670 67.6
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 9.0e-218 760.8 670 66.9
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.2e-217 760.4 664 64.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.0e-217 759.6 670 67.5
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.6e-217 759.2 648 68.2
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.4e-217 758.8 650 64.8
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.5e-217 758.4 674 64.7
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.8e-217 758.1 626 66.1
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 7.6e-217 757.7 679 66.6
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.9e-216 755.0 670 67.2
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-215 753.4 666 66.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 4.2e-215 751.9 670 63.7
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 7.1e-215 751.1 707 65.3
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.2e-214 750.4 647 67.7
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.6e-214 750.0 668 62.6
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.0e-213 747.3 526 75.9
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-213 746.9 670 66.4
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.3e-213 746.1 666 63.2
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-213 746.1 666 63.2
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.3e-213 746.1 666 63.2
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 3.0e-213 745.7 648 64.0
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 3.0e-213 745.7 667 63.3
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 8.7e-213 744.2 646 65.5
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-211 739.6 671 66.9
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 2.8e-211 739.2 666 62.9
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.6e-211 738.8 706 61.5
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.0e-210 735.3 677 61.6
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 7.6e-209 731.1 678 61.4
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 3.8e-208 728.8 635 64.4
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.9e-207 726.5 641 67.9
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.9e-207 726.5 668 61.5
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 6.0e-206 721.5 663 61.1
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 3.0e-205 719.2 660 62.6
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.0e-205 719.2 683 64.9
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 3.7e-203 712.2 669 61.1
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 9.0e-202 707.6 629 62.6
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 6.5e-200 701.4 672 63.1
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.3e-197 693.0 637 62.5
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 8.7e-197 691.0 572 68.0
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 4.8e-195 685.3 678 62.7
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.8e-189 666.8 564 66.5
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.5e-188 663.7 675 56.9
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 5.7e-188 661.8 554 71.5
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.3e-187 660.6 562 63.0
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 6.9e-186 654.8 667 57.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.6e-185 652.9 637 57.6
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-180 637.5 666 57.7
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.5e-180 637.1 509 72.9
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.6e-180 636.3 513 72.5
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.8e-178 630.2 673 55.3
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.1e-170 602.4 476 68.3
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 4.0e-165 585.9 650 53.2
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 2.2e-155 553.5 545 59.6
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-154 550.8 446 70.2
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 7.5e-148 528.5 625 51.7
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.3e-147 527.7 460 70.4
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-144 517.3 453 70.4
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 9.2e-138 495.0 663 44.2
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 6.6e-136 488.8 501 56.9
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 5.6e-135 485.7 551 51.7
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 7.3e-135 485.3 455 59.1
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 4.4e-132 476.1 664 46.8
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 8.6e-128 461.8 681 41.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.5e-116 424.5 388 60.3
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.4e-114 417.9 337 71.8
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 3.4e-108 396.7 660 41.5
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.4e-106 391.3 588 41.3
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.6e-103 379.4 335 67.5
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.8e-102 377.1 423 52.0
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.7e-88 328.9 349 60.7
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.3e-87 326.6 241 76.8
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.9e-75 287.3 212 74.1
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 8.5e-75 285.8 222 67.1
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 6.3e-70 269.6 671 34.7
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.0e-68 264.6 211 64.9
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 7.2e-66 256.1 315 52.7
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.8e-59 233.8 161 78.9
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 4.7e-57 226.9 747 29.9
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 2.0e-55 221.5 193 67.9
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.7e-55 219.2 148 77.0
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.3e-54 216.5 168 66.7
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.3e-53 213.4 180 64.4
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.6e-52 211.1 179 64.8
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 2.5e-50 204.5 180 61.7
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 4.2e-50 203.8 677 28.7
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 7.0e-45 186.4 155 63.2
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.0e-43 182.6 155 62.6
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.0e-40 172.6 128 70.3
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 5.7e-39 166.8 117 75.2
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.4e-37 162.2 147 60.5
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.0e-36 158.3 136 66.2
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.8e-32 145.2 148 58.1
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-27 129.0 189 42.3
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-25 121.7 92 69.6
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-25 121.7 92 69.6
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-25 121.7 92 69.6
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.8e-25 121.3 113 59.3
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.4e-24 119.0 94 64.9
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.8e-24 118.6 97 59.8
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.1e-24 117.9 96 63.5
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.2e-24 117.1 114 54.4
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 2.0e-23 115.2 92 67.4
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.6e-23 114.8 104 60.6
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.1e-21 109.4 136 50.7
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 2.8e-17 94.7 83 63.9
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 4.7e-17 94.0 108 63.9
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.2e-16 90.5 159 44.7
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 2.6e-15 88.2 94 51.1
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.4e-15 87.4 52 73.1
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.2e-14 85.1 75 61.3
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 2.9e-14 84.7 47 91.5
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.9e-13 82.0 83 47.0
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.2e-13 81.3 58 72.4
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.1e-13 80.9 82 51.2
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 2.0e-07 62.0 142 33.8
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 5.8e-07 60.5 59 52.5


User provided reference genes

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