Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 3.7e-95 351.7 198 100.0
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.3e-66 256.9 209 72.7
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 2.8e-66 255.8 204 74.0
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 3.7e-66 255.4 204 72.1
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.4e-65 253.4 198 72.7
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.4e-65 253.4 209 71.8
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.1e-65 252.3 209 71.8
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 3.1e-65 252.3 209 71.8
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 4.0e-65 251.9 209 71.8
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 6.9e-65 251.1 209 71.3
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 6.9e-65 251.1 209 71.3
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 4.5e-64 248.4 205 69.3
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.0e-63 247.3 200 72.0
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 2.2e-63 246.1 209 70.3
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 2.9e-63 245.7 205 72.7
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.9e-63 245.7 208 70.2
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 3.8e-63 245.4 205 70.2
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 4.9e-63 245.0 199 70.4
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 6.5e-63 244.6 209 70.8
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.4e-62 243.4 204 70.1
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.9e-62 243.0 208 69.2
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.9e-62 243.0 200 72.0
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 3.2e-62 242.3 210 69.0
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.2e-62 242.3 209 68.9
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 3.2e-62 242.3 209 68.4
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 9.3e-62 240.7 209 68.4
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 9.3e-62 240.7 206 68.9
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.2e-61 240.4 210 69.0
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 7.9e-61 237.7 208 66.3
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.8e-60 236.5 202 70.3
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 3.0e-60 235.7 209 68.4
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 5.1e-60 235.0 209 65.6
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 6.7e-60 234.6 205 67.3
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 2.5e-59 232.6 209 65.6
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 4.3e-59 231.9 211 67.8
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 5.7e-59 231.5 199 68.8
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 5.7e-59 231.5 210 66.2
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.3e-58 230.3 213 64.3
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.3e-58 230.3 207 67.6
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.6e-58 229.9 207 66.2
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.6e-58 229.9 203 68.5
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.1e-58 229.6 200 67.0
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 2.1e-58 229.6 216 63.9
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 2.1e-58 229.6 203 69.0
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 2.8e-58 229.2 207 67.1
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.8e-58 229.2 210 68.1
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.7e-58 228.8 200 66.0
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.1e-57 227.3 207 67.6
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 1.8e-57 226.5 203 65.0
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.8e-57 226.5 211 66.8
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 4.1e-57 225.3 208 64.9
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 5.3e-57 224.9 196 65.3
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 9.0e-57 224.2 210 65.7
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.0e-55 220.7 206 66.5
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.0e-55 220.7 206 63.6
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.0e-55 220.7 202 66.3
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.0e-55 220.7 206 63.1
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.2e-55 219.5 209 62.7
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 2.9e-55 219.2 207 63.8
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.4e-55 217.6 202 66.3
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.4e-55 217.6 202 66.3
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 2.5e-54 216.1 203 65.5
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.5e-54 216.1 203 65.5
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 2.5e-54 216.1 208 63.0
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 3.2e-54 215.7 202 62.4
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 4.2e-54 215.3 202 66.3
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.2e-54 215.3 202 65.3
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.2e-54 215.3 202 65.3
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 7.2e-54 214.5 213 62.0
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 9.3e-54 214.2 198 62.1
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.2e-53 213.8 199 65.3
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.2e-53 213.8 217 60.4
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.2e-53 213.8 213 61.5
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.6e-53 213.4 198 64.6
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.7e-53 212.6 199 64.8
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.8e-52 209.9 205 65.4
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.8e-52 209.9 199 63.8
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.8e-52 209.9 204 60.8
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.8e-52 209.9 206 60.2
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.8e-52 209.9 208 59.1
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 3.0e-52 209.1 203 62.6
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 3.0e-52 209.1 210 62.4
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 8.7e-52 207.6 202 62.4
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 8.7e-52 207.6 199 63.8
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.1e-51 207.2 211 60.7
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 3.3e-51 205.7 219 60.7
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 9.7e-51 204.1 206 60.7
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 1.3e-50 203.8 204 59.8
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.6e-50 203.4 204 61.3
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 6.3e-50 201.4 211 60.7
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 8.2e-50 201.1 207 59.9
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 8.2e-50 201.1 177 70.1
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 8.2e-50 201.1 196 62.2
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.4e-49 200.3 211 58.3
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.4e-49 199.5 209 57.9
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 2.4e-49 199.5 218 58.3
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 4.1e-49 198.7 214 57.9
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 5.3e-49 198.4 209 59.3
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 5.3e-49 198.4 197 58.9
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 6.9e-49 198.0 203 61.1
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.9e-49 198.0 199 59.3
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 1.2e-48 197.2 210 59.0
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 1.2e-48 197.2 210 59.0
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 1.2e-48 197.2 210 59.0
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-48 196.8 210 57.1
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.5e-48 196.8 210 57.1
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 4.5e-48 195.3 204 59.3
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 7.7e-48 194.5 217 55.8
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 1.0e-47 194.1 208 60.1
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-47 193.7 203 61.1
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 3.8e-47 192.2 203 58.1
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 6.5e-47 191.4 207 58.0
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 8.5e-47 191.0 203 60.6
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.1e-46 190.7 200 59.5
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 2.5e-46 189.5 207 57.5
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 7.2e-46 188.0 207 57.0
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.2e-45 187.2 212 55.2
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.2e-45 187.2 212 55.2
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.6e-45 186.8 206 56.3
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.6e-45 186.8 207 57.0
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 2.1e-45 186.4 208 54.3
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 4.6e-45 185.3 209 56.5
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 5.1e-44 181.8 190 56.8
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 6.7e-44 181.4 206 55.8
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 8.8e-44 181.0 206 62.6
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 5.7e-43 178.3 208 57.7
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 7.4e-43 177.9 200 54.5
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.3e-42 177.2 201 55.7
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.4e-41 172.9 200 59.0
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.4e-36 157.1 208 49.5
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 5.1e-36 155.2 141 59.6
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.1e-35 154.1 143 58.0
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.3e-34 150.6 201 47.8
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 2.4e-33 146.4 201 47.3
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.4e-33 146.4 143 53.8
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 3.1e-33 146.0 201 47.3
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.1e-33 146.0 183 47.5
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 4.1e-33 145.6 116 67.2
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 9.1e-33 144.4 142 52.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.0e-32 143.3 142 54.2
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 2.0e-32 143.3 179 56.4
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.2e-31 139.8 143 51.7
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.9e-31 139.4 206 47.1
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 8.5e-31 137.9 141 55.3
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 2.1e-29 133.3 124 66.9
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.2e-24 117.5 200 41.0
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.2e-21 107.5 130 51.5
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 4.0e-20 102.4 197 40.1
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 1.5e-19 100.5 152 50.0
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.5e-19 100.5 149 45.0
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 2.6e-19 99.8 132 47.0
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.4e-19 99.4 137 46.7
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 5.7e-19 98.6 154 44.8
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 5.7e-19 98.6 79 68.4
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 7.0e-17 91.7 142 43.0
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.6e-16 90.5 99 51.5
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 2.0e-16 90.1 120 43.3
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.9e-15 86.3 94 53.2
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 3.4e-11 72.8 92 58.7
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 9.8e-11 71.2 149 35.6
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 7.0e-09 65.1 117 36.8


User provided reference genes

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