Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-49 199.1 101 100.0
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-49 199.1 101 100.0
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.6e-49 197.6 101 99.0
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 3.2e-42 174.9 100 89.0
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 3.5e-41 171.4 100 86.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.0e-40 168.3 100 84.0
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.1e-39 166.4 97 85.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 3.3e-39 164.9 98 83.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 5.7e-39 164.1 97 83.5
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.1e-38 162.2 99 81.8
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 3.7e-38 161.4 100 80.0
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 8.2e-38 160.2 100 79.0
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 8.2e-38 160.2 100 79.0
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.4e-37 159.5 100 78.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.2e-36 156.4 101 79.2
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 2.0e-36 155.6 101 78.2
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.4e-36 154.8 108 75.0
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 4.5e-36 154.5 101 80.2
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 5.9e-36 154.1 100 78.0
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 5.9e-36 154.1 101 76.2
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.0e-35 153.3 97 79.4
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 2.2e-35 152.1 96 78.1
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.9e-35 151.8 100 76.0
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 8.4e-35 150.2 101 75.2
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 2.5e-34 148.7 101 73.3
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.5e-34 148.7 101 73.3
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.5e-34 148.7 99 73.7
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 3.2e-34 148.3 96 77.1
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 5.5e-34 147.5 100 73.0
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.2e-33 146.4 101 70.3
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 2.1e-33 145.6 100 71.0
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.1e-33 145.6 101 71.3
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.1e-33 145.6 101 72.3
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.1e-33 145.6 75 94.7
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.5e-33 144.8 101 71.3
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 6.1e-33 144.1 99 73.7
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.8e-32 142.5 92 75.0
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 2.3e-32 142.1 99 72.7
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.3e-32 142.1 100 74.0
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 3.0e-32 141.7 92 72.8
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 5.1e-32 141.0 97 70.1
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 5.1e-32 141.0 101 74.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 6.7e-32 140.6 100 69.0
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 6.7e-32 140.6 92 71.7
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 8.7e-32 140.2 91 73.6
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 8.7e-32 140.2 92 72.8
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.1e-31 139.8 101 67.3
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.5e-31 139.4 102 64.7
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.5e-31 139.4 101 66.3
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 3.3e-31 138.3 100 70.0
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 4.3e-31 137.9 99 66.7
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 4.3e-31 137.9 99 66.7
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 4.3e-31 137.9 99 66.7
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 4.3e-31 137.9 101 68.3
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 5.7e-31 137.5 99 66.7
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 9.7e-31 136.7 102 64.7
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 9.7e-31 136.7 92 71.7
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.6e-30 136.0 97 68.0
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.6e-30 136.0 101 65.3
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.6e-30 136.0 91 71.4
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.6e-30 136.0 101 65.3
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 2.2e-30 135.6 94 68.1
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.2e-30 135.6 92 73.9
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.2e-30 135.6 92 73.9
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.8e-30 135.2 101 66.3
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 3.7e-30 134.8 101 65.3
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 3.7e-30 134.8 101 65.3
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 3.7e-30 134.8 97 70.1
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 4.8e-30 134.4 101 64.4
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 4.8e-30 134.4 92 69.6
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 6.3e-30 134.0 91 70.3
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 6.3e-30 134.0 101 64.4
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 8.2e-30 133.7 91 69.2
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.2e-30 133.7 101 68.3
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 8.2e-30 133.7 92 68.5
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 8.2e-30 133.7 92 72.8
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 8.2e-30 133.7 97 69.1
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 8.2e-30 133.7 98 69.4
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.1e-29 133.3 90 70.0
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.1e-29 133.3 101 66.3
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.4e-29 132.9 93 68.8
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.4e-29 132.9 100 66.0
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.8e-29 132.5 93 68.8
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.8e-29 132.5 101 66.3
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 5.3e-29 131.0 91 70.3
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 6.9e-29 130.6 92 66.3
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 9.0e-29 130.2 97 66.0
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.2e-28 129.8 92 66.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.5e-28 129.4 92 66.3
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.5e-28 129.4 88 70.5
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.5e-28 129.4 100 66.0
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.6e-28 128.6 99 68.7
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.6e-28 128.6 98 69.4
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.6e-28 128.6 101 66.3
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 4.5e-28 127.9 92 66.3
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.5e-28 127.9 91 69.2
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 7.7e-28 127.1 88 68.2
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 7.7e-28 127.1 100 65.0
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.0e-27 126.7 92 65.2
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.3e-27 126.3 97 66.0
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.7e-27 125.9 98 64.3
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 5.0e-27 124.4 91 63.7
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 8.5e-27 123.6 96 62.5
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.1e-26 123.2 99 62.6
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.5e-26 122.1 97 61.9
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 3.2e-26 121.7 101 63.4
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.2e-26 121.3 92 63.0
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.2e-26 121.3 92 63.0
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 4.2e-26 121.3 91 63.7
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 9.4e-26 120.2 97 59.8
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.2e-25 119.8 92 62.0
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.2e-25 119.8 97 59.8
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.4e-24 116.3 80 70.0
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.3e-24 115.5 69 76.8
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 3.3e-23 111.7 101 61.4
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 7.4e-23 110.5 97 58.8
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 7.9e-17 90.5 96 47.9
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.4e-16 89.7 96 53.1
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-16 89.7 98 53.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-16 89.7 98 53.1
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.6e-15 85.5 75 61.3
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.7e-14 82.8 98 46.9
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.8e-14 82.0 94 47.9
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.8e-14 82.0 94 47.9
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.8e-14 82.0 94 47.9
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.8e-14 82.0 94 47.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 3.7e-14 81.6 61 70.5
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 4.8e-14 81.3 94 48.9
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-13 80.1 47 72.3
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 7.0e-13 77.4 98 46.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 2.2e-11 72.4 81 45.7
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 2.1e-09 65.9 45 64.4
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.8e-08 62.8 81 40.7
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.5e-07 59.7 32 81.2
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 6.3e-06 54.3 91 35.2


User provided reference genes

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