Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 0.0e+00 1167.9 597 100.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 7.4e-280 966.8 598 81.9
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.1e-278 963.0 598 81.6
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 9.1e-278 959.9 598 81.4
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.9e-268 928.3 599 78.1
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.1e-267 926.4 599 78.1
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 4.2e-267 924.5 599 78.3
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 9.4e-267 923.3 599 78.0
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 4.7e-266 921.0 602 77.4
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 4.8e-263 911.0 633 74.9
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 8.2e-263 910.2 597 76.9
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.4e-262 908.7 598 76.6
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.7e-261 905.2 602 74.8
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.9e-261 904.0 598 76.1
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 7.7e-261 903.7 599 76.0
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 5.5e-259 897.5 595 75.8
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 9.4e-259 896.7 614 74.8
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 6.1e-258 894.0 599 76.1
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.4e-257 892.9 599 75.6
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 3.0e-257 891.7 536 85.6
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 2.0e-256 889.0 600 75.2
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 3.4e-256 888.3 596 73.7
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.7e-256 887.5 626 74.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 9.8e-256 886.7 599 74.8
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 2.9e-252 875.2 603 73.5
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 1.5e-251 872.8 599 73.6
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.2e-251 871.3 599 74.6
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 9.5e-251 870.2 603 72.8
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.2e-248 863.2 597 73.2
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.3e-247 859.8 602 72.6
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 6.3e-247 857.4 599 72.5
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 3.5e-245 851.7 610 70.0
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.3e-244 849.0 599 71.8
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.9e-244 848.6 593 71.5
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 1.5e-243 846.3 593 71.2
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 2.5e-243 845.5 598 72.6
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.2e-242 843.2 604 70.7
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.1e-242 842.4 603 70.3
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.5e-240 836.3 600 71.5
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.5e-240 836.3 599 70.1
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.4e-238 828.9 610 69.3
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 3.2e-238 828.6 593 70.8
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 3.2e-238 828.6 596 70.6
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 5.4e-238 827.8 598 70.2
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.0e-237 825.9 579 72.5
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 3.5e-237 825.1 605 68.4
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.3e-236 823.2 594 69.5
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.3e-236 823.2 597 69.2
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 3.0e-236 822.0 599 69.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.9e-235 819.3 596 69.8
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.5e-235 818.9 598 67.6
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 3.3e-235 818.5 594 69.5
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 7.3e-235 817.4 593 69.0
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.1e-234 815.8 593 68.8
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.1e-234 815.8 594 69.2
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.8e-234 815.5 596 68.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 4.7e-234 814.7 597 69.7
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 6.2e-234 814.3 593 68.8
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 5.2e-233 811.2 594 68.0
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 8.9e-233 810.4 593 67.8
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 2.6e-232 808.9 603 66.8
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.2e-231 805.8 594 67.7
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 2.2e-231 805.8 587 69.2
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.9e-231 805.4 594 67.8
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.9e-231 805.4 594 67.2
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 6.4e-231 804.3 596 67.8
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 8.3e-231 803.9 594 68.2
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 7.8e-229 797.3 575 69.2
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 7.8e-229 797.3 603 67.0
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 7.8e-229 797.3 594 67.5
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 7.8e-229 797.3 595 67.2
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.3e-228 796.6 603 67.2
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.3e-228 795.8 593 67.5
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.9e-228 795.0 607 67.4
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 2.5e-227 792.3 603 66.5
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 3.6e-226 788.5 614 64.7
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 6.2e-226 787.7 603 66.2
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 6.2e-226 787.7 601 66.4
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.8e-225 786.2 606 66.5
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 5.2e-225 784.6 603 66.0
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 4.4e-224 781.6 600 64.7
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 5.8e-224 781.2 599 65.8
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.3e-223 780.0 601 66.1
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 5.4e-222 774.6 602 65.3
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 7.8e-221 770.8 603 64.3
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 2.3e-220 769.2 599 63.9
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 3.9e-220 768.5 600 64.3
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.5e-219 765.8 599 63.6
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.3e-219 765.4 617 64.5
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 7.3e-219 764.2 563 68.2
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 3.1e-217 758.8 595 64.2
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 3.1e-217 758.8 602 64.5
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 6.8e-217 757.7 518 74.3
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.2e-216 756.9 591 63.8
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 4.4e-216 755.0 604 64.4
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 6.0e-213 744.6 593 63.6
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 7.8e-213 744.2 599 64.8
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.0e-212 743.8 598 63.7
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 3.9e-212 741.9 598 63.5
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 7.3e-211 737.6 606 62.7
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.8e-210 735.7 593 65.1
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.4e-209 733.4 597 64.3
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 1.4e-209 733.4 601 63.2
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 6.9e-209 731.1 596 62.2
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.3e-207 726.9 560 64.8
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.9e-207 725.7 595 63.5
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 4.2e-206 721.8 584 64.7
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.7e-205 719.2 595 63.0
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.7e-205 719.2 595 63.0
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.5e-205 718.8 595 63.4
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 3.9e-204 715.3 593 62.6
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.5e-203 713.4 595 62.9
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 1.7e-199 699.9 598 63.4
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 5.4e-198 694.9 592 61.1
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 3.0e-196 689.1 600 59.2
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.0e-192 676.4 593 59.2
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.9e-188 662.1 597 59.1
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 4.5e-184 648.7 593 59.5
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.0e-183 647.5 598 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 6.3e-178 628.2 619 54.6
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 5.9e-176 621.7 601 54.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.6e-173 613.6 593 54.8
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.3e-171 605.9 465 67.1
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.0e-164 582.8 317 94.3
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.9e-164 582.4 442 67.2
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.9e-158 563.5 394 76.1
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.0e-152 543.5 604 48.5
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.0e-147 526.9 354 80.2
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 8.0e-141 505.0 730 42.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 8.6e-127 458.4 509 49.9
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.6e-125 453.0 321 69.2
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 3.0e-124 449.9 453 49.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.6e-123 446.8 626 41.5
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.0e-115 420.6 358 62.3
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 7.3e-110 402.1 606 40.8
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 9.3e-89 332.0 475 41.5
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 4.6e-88 329.7 267 62.9
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.8e-79 301.2 531 39.0
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.7e-74 284.6 198 70.7
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.3e-71 274.2 136 96.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 2.4e-68 264.2 183 73.8
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 6.5e-66 256.1 219 56.2
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.2e-58 231.1 162 69.8
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.2e-50 204.5 384 39.3
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.2e-48 198.7 101 100.0
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.6e-48 197.2 101 99.0
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 7.0e-44 183.0 119 68.9
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 7.4e-38 162.9 183 54.6
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.3e-37 162.2 115 64.3
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.7e-37 161.8 115 64.3
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 1.7e-37 161.8 126 62.7
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.6e-35 155.2 134 62.7
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.0e-31 142.5 98 73.5
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 5.3e-28 130.2 80 76.2
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 9.1e-28 129.4 210 41.9
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 1.6e-24 118.6 181 47.0
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 2.7e-24 117.9 130 56.9
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 4.0e-23 114.0 82 69.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.1e-17 95.9 107 54.2
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 9.5e-17 92.8 65 63.1
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 4.0e-15 87.4 56 69.6
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-12 79.3 74 52.7
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 7.3e-09 66.6 147 32.0
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.6e-08 65.5 35 80.0
TAR636G1761 Trochodendron aralioides HOM05D004159 ORTHO05D415208 3.6e-08 64.3 73 58.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 4.7e-08 63.9 61 55.7
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 8.0e-08 63.2 41 70.7


User provided reference genes

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