Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 5.8e-132 474.2 228 100.0
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 1.2e-118 429.9 228 90.4
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 6.6e-112 407.5 228 83.8
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 1.5e-111 406.4 228 83.8
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 1.3e-110 403.3 228 83.8
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.1e-109 400.2 228 81.1
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.8e-109 399.4 228 83.8
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 1.8e-109 399.4 228 82.5
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 2.4e-109 399.1 228 82.5
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 5.3e-109 397.9 228 81.6
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 2.6e-108 395.6 229 82.1
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 3.4e-108 395.2 229 82.1
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 2.2e-107 392.5 228 81.1
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 2.9e-107 392.1 251 74.9
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 6.4e-107 391.0 226 81.4
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 6.4e-107 391.0 228 80.7
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 1.4e-106 389.8 228 80.3
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 1.4e-106 389.8 229 80.8
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 3.2e-106 388.7 229 80.8
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 3.2e-106 388.7 228 79.8
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 9.3e-106 387.1 230 79.6
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.2e-105 386.7 229 79.9
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 1.2e-105 386.7 259 74.1
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 1.6e-105 386.3 229 80.3
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 2.1e-105 386.0 229 79.5
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.1e-105 386.0 229 79.5
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 4.6e-105 384.8 228 80.3
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 4.6e-105 384.8 243 75.3
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 1.0e-104 383.6 228 80.3
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 1.3e-104 383.3 229 79.0
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.3e-104 383.3 229 79.0
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.7e-104 382.9 229 79.5
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 3.0e-104 382.1 228 78.1
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.0e-104 382.1 229 79.0
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 3.0e-104 382.1 229 78.6
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 5.1e-104 381.3 226 78.8
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 5.1e-104 381.3 229 78.6
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 8.7e-104 380.6 269 70.3
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.9e-103 379.4 228 78.9
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 2.5e-103 379.0 223 78.9
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 2.5e-103 379.0 229 79.0
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 2.5e-103 379.0 229 78.2
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 2.5e-103 379.0 226 78.3
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 3.3e-103 378.6 229 78.2
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 3.3e-103 378.6 263 71.9
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 5.6e-103 377.9 228 77.2
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 2.1e-102 375.9 228 75.9
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 2.1e-102 375.9 240 74.6
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 3.6e-102 375.2 228 75.0
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 6.2e-102 374.4 228 76.8
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 8.1e-102 374.0 260 70.8
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.4e-101 373.2 228 77.2
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.4e-101 373.2 280 67.1
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.8e-101 372.9 229 77.7
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 4.0e-101 371.7 228 77.2
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 6.9e-101 370.9 226 75.7
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 6.9e-101 370.9 226 75.2
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 9.0e-101 370.5 226 76.1
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 9.0e-101 370.5 228 76.3
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 2.0e-100 369.4 226 75.7
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 2.0e-100 369.4 224 74.1
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 5.8e-100 367.9 228 74.1
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 5.8e-100 367.9 228 76.8
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 5.8e-100 367.9 229 76.9
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 2.9e-99 365.5 226 74.3
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 2.9e-99 365.5 226 74.8
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 3.8e-99 365.2 226 73.9
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 4.9e-99 364.8 226 74.8
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 4.9e-99 364.8 226 74.3
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 4.9e-99 364.8 227 74.9
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.9e-99 364.8 228 75.0
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 6.4e-99 364.4 229 75.1
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.4e-98 363.2 226 73.9
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.9e-98 362.8 229 76.0
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 5.4e-98 361.3 228 74.6
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 5.4e-98 361.3 227 74.0
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 9.3e-98 360.5 227 74.0
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 1.2e-97 360.1 227 73.6
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 1.3e-96 356.7 229 73.4
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.1e-95 353.6 228 71.1
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 3.3e-95 352.1 229 73.4
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 4.3e-95 351.7 229 72.9
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 5.6e-95 351.3 228 71.1
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 5.6e-95 351.3 229 70.3
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 7.4e-95 350.9 229 72.9
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 2.1e-94 349.4 223 72.2
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.8e-94 349.0 229 69.4
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.8e-93 346.3 229 72.5
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 7.1e-90 334.3 199 78.4
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.2e-89 333.6 195 79.0
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.1e-87 327.0 204 76.5
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 4.3e-87 325.1 205 76.1
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 2.1e-86 322.8 229 68.6
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 2.8e-86 322.4 219 72.1
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.8e-86 322.4 298 59.1
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.8e-86 321.6 205 73.7
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 1.4e-85 320.1 227 66.1
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 8.7e-80 300.8 265 54.3
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.3e-79 298.5 228 64.0
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.3e-78 297.0 239 58.2
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.8e-78 295.0 228 64.9
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 7.2e-74 281.2 238 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.3e-62 243.8 303 43.9
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.8e-62 241.9 250 51.2
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 5.3e-61 238.4 237 51.1
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 3.0e-56 222.6 245 46.9
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.7e-56 221.5 125 86.4
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 5.9e-52 208.4 145 70.3
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 1.1e-50 204.1 234 44.4
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 2.7e-49 199.5 238 42.0
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 4.7e-49 198.7 325 40.3
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 8.3e-38 161.4 120 62.5
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 8.3e-38 161.4 95 72.6
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.0e-36 156.8 82 81.7
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 7.7e-36 154.8 96 76.0
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.5e-23 114.0 83 66.3
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.5e-23 114.0 83 66.3
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.6e-20 104.0 58 75.9
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.7e-20 103.2 105 53.3
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.0e-20 102.1 74 67.6
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 2.2e-14 83.6 122 41.8
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 8.3e-14 81.6 51 70.6
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 3.2e-13 79.7 69 56.5
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 4.1e-13 79.3 51 68.6
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 4.1e-13 79.3 51 68.6
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 5.6e-10 68.9 73 43.8
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.2e-09 67.8 43 65.1
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.6e-09 67.4 52 61.5
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 2.0e-07 60.5 76 43.4
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 7.6e-07 58.5 38 63.2


User provided reference genes

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