Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 6.4e-51 203.8 101 100.0
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 4.8e-38 161.0 100 77.0
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 2.4e-37 158.7 100 76.0
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 1.2e-36 156.4 100 74.0
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 5.9e-36 154.1 99 72.7
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 1.3e-35 152.9 100 72.0
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.7e-35 152.5 100 72.0
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 1.7e-35 152.5 100 73.0
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 5.0e-35 151.0 99 71.7
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 6.5e-35 150.6 99 72.7
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 6.5e-35 150.6 100 71.0
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 1.1e-34 149.8 100 73.0
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 1.1e-34 149.8 100 73.0
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 1.1e-34 149.8 100 69.0
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 2.5e-34 148.7 100 69.0
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 2.5e-34 148.7 100 72.0
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 3.2e-34 148.3 98 72.4
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 5.5e-34 147.5 99 70.7
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 5.5e-34 147.5 100 68.0
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 7.2e-34 147.1 100 69.0
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 7.2e-34 147.1 100 69.0
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 7.2e-34 147.1 100 70.0
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 9.3e-34 146.7 100 67.0
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 9.3e-34 146.7 100 66.0
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 1.2e-33 146.4 100 69.0
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 1.2e-33 146.4 100 68.0
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 1.6e-33 146.0 100 67.0
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 1.6e-33 146.0 100 69.0
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 1.6e-33 146.0 100 68.0
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 2.1e-33 145.6 100 65.0
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 2.7e-33 145.2 100 67.0
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 3.5e-33 144.8 100 69.0
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 4.6e-33 144.4 100 71.0
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 4.6e-33 144.4 97 70.1
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 4.6e-33 144.4 97 70.1
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 6.1e-33 144.1 97 67.0
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 6.1e-33 144.1 100 69.0
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 7.9e-33 143.7 98 68.4
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 7.9e-33 143.7 100 67.0
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 1.0e-32 143.3 100 66.0
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 1.0e-32 143.3 100 66.0
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 1.3e-32 142.9 100 67.0
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.3e-32 142.9 99 67.7
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 1.8e-32 142.5 100 65.0
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 1.8e-32 142.5 98 67.3
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 1.8e-32 142.5 98 67.3
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 2.3e-32 142.1 100 69.0
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 3.0e-32 141.7 99 64.6
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 3.9e-32 141.4 100 69.0
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 5.1e-32 141.0 100 66.0
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 6.7e-32 140.6 98 66.3
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 6.7e-32 140.6 99 66.7
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 8.7e-32 140.2 100 65.0
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 1.9e-31 139.0 97 66.0
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 2.5e-31 138.7 100 66.0
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 2.5e-31 138.7 100 66.0
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 3.3e-31 138.3 100 67.0
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 3.3e-31 138.3 101 66.3
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 4.3e-31 137.9 100 68.0
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 5.7e-31 137.5 99 60.6
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 7.4e-31 137.1 100 66.0
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 2.8e-30 135.2 97 63.9
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 4.8e-30 134.4 100 64.0
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 4.8e-30 134.4 100 64.0
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 4.8e-30 134.4 99 61.6
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 6.3e-30 134.0 100 62.0
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 6.3e-30 134.0 100 62.0
Cpa.g.sc11.48 Carica papaya HOM05D004707 ORTHO05D005837 6.3e-30 134.0 90 72.2
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 6.3e-30 134.0 101 64.4
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 6.3e-30 134.0 101 64.4
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 1.1e-29 133.3 100 61.0
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 1.1e-29 133.3 99 64.6
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.1e-29 133.3 101 64.4
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-29 132.9 101 64.4
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 1.8e-29 132.5 100 62.0
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.8e-29 132.5 100 62.0
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 1.8e-29 132.5 100 59.0
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.8e-29 132.5 99 63.6
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 2.4e-29 132.1 99 61.6
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.4e-29 132.1 100 64.0
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 3.1e-29 131.7 101 62.4
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 3.1e-29 131.7 100 64.0
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 6.9e-29 130.6 100 57.0
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 1.5e-28 129.4 100 64.0
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 4.5e-28 127.9 100 60.0
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 1.7e-27 125.9 99 55.6
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 1.7e-27 125.9 100 57.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 3.8e-27 124.8 98 63.3
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 8.5e-27 123.6 100 55.0
SEGI_23190 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 8.5e-27 123.6 100 53.0
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 1.9e-26 122.5 98 62.2
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 3.2e-26 121.7 105 56.2
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 1.2e-25 119.8 100 57.0
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.2e-25 119.8 91 62.6
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 3.6e-25 118.2 95 58.9
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 7.9e-25 117.1 100 59.0
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 7.9e-25 117.1 98 56.1
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 3.9e-24 114.8 102 54.9
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.7e-22 109.4 70 71.4
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 6.3e-22 107.5 69 69.6
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 5.0e-19 97.8 70 62.9
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.4e-18 96.3 93 48.4
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.8e-16 89.4 99 39.4
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 5.1e-16 87.8 70 58.6
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 1.5e-15 86.3 98 39.8
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 2.2e-14 82.4 97 46.4
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.8e-14 82.0 100 36.0
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 5.3e-13 77.8 99 32.3
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.0e-11 73.6 71 56.3
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 5.0e-11 71.2 99 31.3
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.1e-09 65.9 92 34.8
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 3.6e-09 65.1 99 32.3
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 6.1e-09 64.3 66 47.0
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 4.0e-08 61.6 61 42.6
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.1e-07 60.1 70 34.3
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 4.4e-07 58.2 46 63.0
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 7.5e-07 57.4 63 39.7


User provided reference genes

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