Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0067F.1_g036870 Hydrangea macrophylla HOM05D001008 ORTHO05D009098 1.7e-35 152.1 76 100.0
Hma1.2p1_0067F.1_g036880 Hydrangea macrophylla HOM05D001008 ORTHO05D009098 1.7e-35 152.1 76 100.0
MBI18_g28228_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D009098 1.0e-32 142.9 76 89.5
Lj2A329T54 Lonicera japonica HOM05D001008 ORTHO05D009098 3.0e-32 141.4 76 89.5
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 1.9e-31 138.7 76 88.2
Nitab4.5_0000076g0220 Nicotiana tabacum HOM05D001008 ORTHO05D009098 1.9e-31 138.7 75 89.3
Dinv16828 Davidia involucrata HOM05D001008 ORTHO05D009098 2.5e-31 138.3 75 88.0
TAR627G0015 Trochodendron aralioides HOM05D001008 ORTHO05D009098 2.5e-31 138.3 76 86.8
CAN.G23.10 Capsicum annuum HOM05D001008 ORTHO05D009098 4.3e-31 137.5 75 88.0
MSTRG.16297 Avicennia marina HOM05D001008 ORTHO05D009098 5.6e-31 137.1 75 86.7
Cc09_g07820 Coffea canephora HOM05D001008 ORTHO05D009098 5.6e-31 137.1 76 86.8
HanXRQChr09g0259921 Helianthus annuus HOM05D001008 ORTHO05D009098 5.6e-31 137.1 76 86.8
Peaxi162Scf00395g00411 Petunia axillaris HOM05D001008 ORTHO05D009098 1.2e-30 136.0 76 86.8
QL05p062602 Quercus lobata HOM05D001008 ORTHO05D009098 1.2e-30 136.0 76 85.5
SalBow8G1627 Salvia bowleyana HOM05D001008 ORTHO05D009098 1.2e-30 136.0 76 84.2
Aqoxy1G01588 Aquilegia oxysepala HOM05D001008 ORTHO05D009098 1.6e-30 135.6 76 84.2
Lsat_1_v5_gn_5_159560 Lactuca sativa HOM05D001008 ORTHO05D009098 1.6e-30 135.6 76 86.8
PGR083G1201 Punica granatum HOM05D000251 ORTHO05D000414 1.6e-30 135.6 76 88.2
Solyc02g022930.3 Solanum lycopersicum HOM05D001008 ORTHO05D009098 1.6e-30 135.6 75 86.7
Sopen02g006560 Solanum pennellii HOM05D001008 ORTHO05D009098 1.6e-30 135.6 75 86.7
vmacro03375 Vaccinium macrocarpon HOM05D001008 ORTHO05D009098 1.6e-30 135.6 76 82.9
Glyma.15G131200 Glycine max HOM05D001008 ORTHO05D009098 2.1e-30 135.2 76 82.9
RcHm_v2.0_Chr5g0016441 Rosa chinensis HOM05D001008 ORTHO05D009098 2.1e-30 135.2 76 84.2
ATR1098G042 Amborella trichopoda HOM05D001008 ORTHO05D009098 2.8e-30 134.8 76 81.6
CSS0020227 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D009098 2.8e-30 134.8 76 84.2
CSS0050006 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D009098 2.8e-30 134.8 76 84.2
Migut.M01903 Erythranthe guttata HOM05D001008 ORTHO05D009098 2.8e-30 134.8 75 86.7
THA.LOC104806251 Tarenaya hassleriana HOM05D001008 ORTHO05D009098 3.6e-30 134.4 76 85.5
Eucgr.D00129 Eucalyptus grandis HOM05D001008 ORTHO05D009098 4.7e-30 134.0 76 85.5
FvH4_3g10220 Fragaria vesca HOM05D001008 ORTHO05D009098 4.7e-30 134.0 76 81.6
FAN21G3707 Fragaria x ananassa HOM05D002312 ORTHO05D001614 4.7e-30 134.0 76 81.6
GSVIVG01021668001 Vitis vinifera HOM05D001008 ORTHO05D009098 4.7e-30 134.0 76 85.5
Cpa.g.sc166.37 Carica papaya HOM05D001008 ORTHO05D009098 6.2e-30 133.7 76 82.9
CiPaw.09G142300 Carya illinoinensis HOM05D001008 ORTHO05D009098 6.2e-30 133.7 76 85.5
Atru.chr10.805 Acer truncatum HOM05D001008 ORTHO05D009098 8.0e-30 133.3 76 84.2
Actinidia33687 Actinidia chinensis HOM05D001008 ORTHO05D009098 1.1e-29 132.9 76 82.9
FAN11G2615 Fragaria x ananassa HOM05D002312 ORTHO05D001614 1.1e-29 132.9 76 80.3
PSO541G4496 Papaver somniferum HOM05D001008 ORTHO05D009098 1.1e-29 132.9 76 82.9
PSO675G1263 Papaver somniferum HOM05D001008 ORTHO05D009098 1.1e-29 132.9 76 82.9
Sc17g0004600 Simmondsia chinensis HOM05D001008 ORTHO05D009098 1.1e-29 132.9 76 82.9
Zm00001eb224720 Zea mays HOM05D001008 ORTHO05D009098 1.1e-29 132.9 76 81.6
Haze_05846 Corylus avellana HOM05D001008 ORTHO05D009098 1.4e-29 132.5 76 85.5
Duzib235G1260 Durio zibethinus HOM05D001008 ORTHO05D009098 1.4e-29 132.5 76 84.2
unitig_32.g11680 Utricularia gibba HOM05D001008 ORTHO05D009098 1.4e-29 132.5 76 81.6
AUR62030139 Chenopodium quinoa HOM05D001008 ORTHO05D009098 1.8e-29 132.1 75 84.0
Ca_00850_v3 Cicer arietinum L. HOM05D001008 ORTHO05D009098 1.8e-29 132.1 76 82.9
Prupe.4G091300 Prunus persica HOM05D001008 ORTHO05D009098 1.8e-29 132.1 76 82.9
Sabra16G0316000 Salix brachista HOM05D001008 ORTHO05D009098 1.8e-29 132.1 76 84.2
Nn3g20168 Nelumbo nucifera HOM05D001008 ORTHO05D009098 2.3e-29 131.7 76 82.9
TPR.G26338 Trifolium pratense HOM05D001008 ORTHO05D009098 2.3e-29 131.7 76 80.3
FAN16G1118 Fragaria x ananassa HOM05D002312 ORTHO05D001614 3.1e-29 131.3 76 80.3
Phvul.006G127500 Phaseolus vulgaris HOM05D001008 ORTHO05D009098 3.1e-29 131.3 76 81.6
VMungo0540G1033 Vigna mungo HOM05D001008 ORTHO05D009098 3.1e-29 131.3 76 81.6
Gohir.D02G105500 Gossypium hirsutum HOM05D001008 ORTHO05D009098 4.0e-29 131.0 75 82.7
Gorai.005G119700 Gossypium raimondii HOM05D001008 ORTHO05D009098 4.0e-29 131.0 75 82.7
Lalb_Chr20g0120101 Lupinus albus HOM05D001008 ORTHO05D009098 4.0e-29 131.0 76 81.6
AUR62002682 Chenopodium quinoa HOM05D001008 ORTHO05D009098 5.2e-29 130.6 75 82.7
Medtr2g030400 Medicago truncatula HOM05D001008 ORTHO05D009098 5.2e-29 130.6 76 80.3
Hund17657 Selenicereus undatus HOM05D001008 ORTHO05D009098 5.2e-29 130.6 75 82.7
ClCG03G006140 Citrullus lanatus HOM05D001008 ORTHO05D009098 6.8e-29 130.2 76 81.6
Glyma.09G025100 Glycine max HOM05D001008 ORTHO05D009098 6.8e-29 130.2 76 80.3
Sed0010622 Sechium edule HOM05D001008 ORTHO05D009098 6.8e-29 130.2 76 81.6
Thecc.06G004300 Theobroma cacao HOM05D001008 ORTHO05D009098 6.8e-29 130.2 76 82.9
arahy.Tifrunner.gnm1.ann1.3P38HT Arachis hypogaea HOM05D001008 ORTHO05D009098 8.9e-29 129.8 76 80.3
arahy.Tifrunner.gnm1.ann1.J24SNI Arachis hypogaea HOM05D001008 ORTHO05D009098 8.9e-29 129.8 76 80.3
DCAR_007835 Daucus carota HOM05D001008 ORTHO05D009098 8.9e-29 129.8 76 81.6
Potri.001G465600 Populus trichocarpa HOM05D001008 ORTHO05D009098 1.2e-28 129.4 76 81.6
Aa31LG6G3000 Aethionema arabicum HOM05D001008 ORTHO05D009098 1.5e-28 129.0 76 81.6
COL.COLO4_26854 Corchorus olitorius HOM05D001008 ORTHO05D009098 1.5e-28 129.0 75 81.3
MELO3C002813.2 Cucumis melo HOM05D001008 ORTHO05D009098 1.5e-28 129.0 76 80.3
CsaV3_1G037300 Cucumis sativus L. HOM05D001008 ORTHO05D009098 1.5e-28 129.0 76 80.3
Lj6g0017297 Lotus japonicus HOM05D001008 ORTHO05D009098 1.5e-28 129.0 76 80.3
EL10Ac8g19545 Beta vulgaris HOM05D001008 ORTHO05D009098 2.0e-28 128.6 75 78.7
MD05G1271700 Malus domestica HOM05D001008 ORTHO05D009098 2.0e-28 128.6 76 78.9
C03p83680 Brassica napus HOM05D001008 ORTHO05D009098 2.6e-28 128.3 76 80.3
BolC3t20647H Brassica oleracea HOM05D001008 ORTHO05D009098 2.6e-28 128.3 76 80.3
Sp7g19010 Schrenkiella parvula HOM05D001008 ORTHO05D009098 2.6e-28 128.3 76 81.6
FAN25G1843 Fragaria x ananassa HOM05D002312 ORTHO05D001614 5.8e-28 127.1 75 78.7
BcaB03g11709 Brassica carinata HOM05D001008 ORTHO05D009098 7.5e-28 126.7 76 80.3
BcaC01g00729 Brassica carinata HOM05D001008 ORTHO05D009098 7.5e-28 126.7 76 80.3
CARHR227490 Cardamine hirsuta HOM05D001008 ORTHO05D009098 7.5e-28 126.7 76 80.3
BcaC01g00736 Brassica carinata HOM05D001008 ORTHO05D009098 9.8e-28 126.3 76 78.9
AL7G33220 Arabidopsis lyrata HOM05D001008 ORTHO05D009098 1.3e-27 125.9 76 80.3
AT4G20930 Arabidopsis thaliana HOM05D001008 ORTHO05D009098 1.3e-27 125.9 76 80.3
A08p15410 Brassica napus HOM05D001008 ORTHO05D009098 1.3e-27 125.9 76 78.9
BraA08t33519Z Brassica rapa HOM05D001008 ORTHO05D009098 1.3e-27 125.9 76 78.9
Carub.0007s2050 Capsella rubella HOM05D001008 ORTHO05D009098 1.3e-27 125.9 76 80.3
Thhalv10025955m.g Eutrema salsugineum HOM05D001008 ORTHO05D009098 1.7e-27 125.6 76 80.3
Ciclev10015754m.g Citrus clementina HOM05D001008 ORTHO05D009098 2.2e-27 125.2 76 78.9
Manes.14G124021 Manihot esculenta HOM05D001008 ORTHO05D009098 3.7e-27 124.4 76 80.3
Mapoly0028s0140 Marchantia polymorpha HOM05D001008 ORTHO05D009098 7.0e-26 120.2 76 72.4
CDE02G1783 Ceratophyllum demersum HOM05D001008 ORTHO05D009098 1.2e-25 119.4 77 75.3
Pp3c3_17080 Physcomitrium patens HOM05D001008 ORTHO05D009098 1.6e-25 119.0 76 71.1
Eucgr.D00258 Eucalyptus grandis HOM05D001008 ORTHO05D009098 8.6e-24 113.2 76 75.0
AagrBONN_evm.TU.Sc2ySwM_344.3223 Anthoceros agrestis HOM05D001008 ORTHO05D009098 2.5e-23 111.7 76 67.1
HPP92_028174 Vanilla planifolia HOM05D001008 ORTHO05D009098 4.7e-22 107.5 60 81.7
HPP92_026301 Vanilla planifolia HOM05D001008 ORTHO05D009098 2.3e-21 105.1 60 83.3
Nitab4.5_0004204g0040 Nicotiana tabacum HOM05D001008 ORTHO05D009098 1.6e-17 92.4 75 66.7
arahy.Tifrunner.gnm1.ann1.1AJ3D1 Arachis hypogaea HOM05D001008 ORTHO05D009098 2.1e-17 92.0 53 75.5
SGA_v2.0_scaffold1G00273 Striga asiatica HOM05D000033 ORTHO05D001614 3.5e-17 91.3 75 65.3
MBI18_g37149_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D009098 1.1e-13 79.7 76 57.9
PRCOL_00002051 Prasinoderma coloniale HOM05D001008 ORTHO05D009098 3.1e-13 78.2 75 45.3
Haze_27311 Corylus avellana HOM05D001008 ORTHO05D009098 5.2e-13 77.4 76 47.4
Haze_26700 Corylus avellana HOM05D001008 ORTHO05D009098 9.9e-12 73.2 76 43.4
Cre14.g630859 Chlamydomonas reinhardtii HOM05D001008 ORTHO05D009098 5.4e-10 67.4 73 42.5
Gohir.A03G085101 Gossypium hirsutum HOM05D001008 ORTHO05D009098 9.6e-07 56.6 28 85.7
Cfa024516 Carpinus fangiana HOM05D001008 ORTHO05D009098 2.8e-06 55.1 75 38.7


User provided reference genes

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