Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0066F.1_g035730 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 5.9e-35 150.2 70 100.0
Hma1.2p1_0049F.1_g028520 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 2.0e-27 125.2 70 82.9
Hma1.2p1_0895F.1_g233720 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 4.7e-24 114.0 75 72.0
Lj4C258T9 Lonicera japonica HOM05D001174 ORTHO05D001003 1.4e-17 92.4 65 61.5
Dinv28177 Davidia involucrata HOM05D001174 ORTHO05D000292 4.2e-17 90.9 68 60.3
Lsat_1_v5_gn_3_65760 Lactuca sativa HOM05D001174 ORTHO05D001003 1.6e-16 89.0 68 60.3
Dinv05358 Davidia involucrata HOM05D001174 ORTHO05D001003 2.7e-16 88.2 69 56.5
HanXRQChr15g0483001 Helianthus annuus HOM05D001174 ORTHO05D001003 3.6e-16 87.8 68 58.8
Rhsim10G0180900 Rhododendron simsii HOM05D001174 ORTHO05D001003 8.0e-16 86.7 62 62.9
MD09G1267100 Malus domestica HOM05D001174 ORTHO05D001003 1.0e-15 86.3 66 59.1
Sc11g0004670 Simmondsia chinensis HOM05D001174 ORTHO05D001003 1.0e-15 86.3 68 55.9
CSS0050231 Camellia sinensis var. sinensis HOM05D001174 ORTHO05D001003 1.4e-15 85.9 62 59.7
Rhsim10G0196400 Rhododendron simsii HOM05D001174 ORTHO05D001003 1.4e-15 85.9 67 56.7
vmacro20635 Vaccinium macrocarpon HOM05D001174 ORTHO05D001003 1.4e-15 85.9 65 58.5
Manes.01G121000 Manihot esculenta HOM05D001174 ORTHO05D001003 2.3e-15 85.1 65 58.5
Prupe.3G164800 Prunus persica HOM05D001174 ORTHO05D001003 3.0e-15 84.7 68 57.4
Actinidia17192 Actinidia chinensis HOM05D001174 ORTHO05D001003 3.9e-15 84.3 68 52.9
TAR371G0619 Trochodendron aralioides HOM05D001174 ORTHO05D001003 3.9e-15 84.3 64 59.4
RcHm_v2.0_Chr3g0492331 Rosa chinensis HOM05D001174 ORTHO05D001003 6.7e-15 83.6 67 55.2
MELO3C013808.2 Cucumis melo HOM05D001174 ORTHO05D001003 1.1e-14 82.8 68 57.4
Sed0024967 Sechium edule HOM05D001174 ORTHO05D001003 1.5e-14 82.4 69 55.1
PGSC0003DMG400013247 Solanum tuberosum HOM05D001174 ORTHO05D001003 1.5e-14 82.4 69 56.5
EL10Ac9g20685 Beta vulgaris HOM05D001174 ORTHO05D001003 2.0e-14 82.0 68 54.4
CAN.G222.78 Capsicum annuum HOM05D001174 ORTHO05D001003 2.6e-14 81.6 69 55.1
DCAR_014156 Daucus carota HOM05D001174 ORTHO05D001003 2.6e-14 81.6 67 52.2
Oeu012497.1 Olea europaea HOM05D001174 ORTHO05D001003 2.6e-14 81.6 68 52.9
GSVIVG01030666001 Vitis vinifera HOM05D001174 ORTHO05D001003 2.6e-14 81.6 66 54.5
CsaV3_3G001180 Cucumis sativus L. HOM05D001174 ORTHO05D001003 3.3e-14 81.3 68 54.4
CARHR292300 Cardamine hirsuta HOM05D001174 ORTHO05D001003 4.4e-14 80.9 68 52.9
FAN23G2924 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.4e-14 80.9 69 52.2
Nn3g18430 Nelumbo nucifera HOM05D001174 ORTHO05D001003 4.4e-14 80.9 64 56.2
Solyc11g011560.3 Solanum lycopersicum HOM05D001174 ORTHO05D001003 4.4e-14 80.9 69 55.1
Sopen11g006430 Solanum pennellii HOM05D001174 ORTHO05D001003 4.4e-14 80.9 69 55.1
Cpa.g.sc87.13 Carica papaya HOM05D001174 ORTHO05D001003 7.4e-14 80.1 68 55.9
AUR62037364 Chenopodium quinoa HOM05D001174 ORTHO05D001003 7.4e-14 80.1 68 54.4
THA.LOC104805977 Tarenaya hassleriana HOM05D001174 ORTHO05D001003 7.4e-14 80.1 68 52.9
Cc07_g13160 Coffea canephora HOM05D001174 ORTHO05D001003 9.7e-14 79.7 68 51.5
FAN19G2209 Fragaria x ananassa HOM05D001174 ORTHO05D001003 9.7e-14 79.7 69 50.7
FAN26G1916 Fragaria x ananassa HOM05D001174 ORTHO05D001003 9.7e-14 79.7 69 50.7
FAN28G1611 Fragaria x ananassa HOM05D001174 ORTHO05D001003 9.7e-14 79.7 69 50.7
Sabra17G0111100 Salix brachista HOM05D001174 ORTHO05D001003 9.7e-14 79.7 68 52.9
Sabra17G0114100 Salix brachista HOM05D001174 ORTHO05D001003 9.7e-14 79.7 68 52.9
TWI77G0649 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 1.3e-13 79.3 68 52.9
AUR62042690 Chenopodium quinoa HOM05D001174 ORTHO05D001003 2.2e-13 78.6 64 54.7
Thhalv10018197m.g Eutrema salsugineum HOM05D001174 ORTHO05D001003 2.2e-13 78.6 68 52.9
Ciclev10007029m.g Citrus clementina HOM05D001174 ORTHO05D001003 2.8e-13 78.2 65 55.4
QL02p059620 Quercus lobata HOM05D001174 ORTHO05D001003 2.8e-13 78.2 68 51.5
Aa31LG2G2880 Aethionema arabicum HOM05D001174 ORTHO05D001003 4.8e-13 77.4 69 47.8
Potri.017G135200 Populus trichocarpa HOM05D001174 ORTHO05D001003 4.8e-13 77.4 68 51.5
AT1G66170 Arabidopsis thaliana HOM05D001174 ORTHO05D001003 6.3e-13 77.0 68 48.5
Migut.H02233 Erythranthe guttata HOM05D001174 ORTHO05D001003 6.3e-13 77.0 68 51.5
Glyma.02G243200 Glycine max HOM05D001174 ORTHO05D001003 6.3e-13 77.0 64 53.1
Thecc.08G138800 Theobroma cacao HOM05D001174 ORTHO05D001003 6.3e-13 77.0 68 52.9
CANSAT54G1561 Cannabis sativa HOM05D001174 ORTHO05D001003 8.2e-13 76.6 62 54.8
MBI13_g04214_MAGBIO Magnolia biondii HOM05D001174 ORTHO05D001003 8.2e-13 76.6 64 54.7
VMungo0647G2455 Vigna mungo HOM05D001174 ORTHO05D001003 8.2e-13 76.6 65 50.8
Oeu006311.1 Olea europaea HOM05D001174 ORTHO05D001003 1.1e-12 76.3 65 55.4
C02p21800 Brassica napus HOM05D001174 ORTHO05D001003 1.4e-12 75.9 68 51.5
Carub.0002s1216 Capsella rubella HOM05D001174 ORTHO05D001003 1.4e-12 75.9 68 50.0
Phvul.008G238400 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 1.4e-12 75.9 65 50.8
Atru.chr1.2010 Acer truncatum HOM05D001174 ORTHO05D001003 1.8e-12 75.5 62 54.8
Cfa007781 Carpinus fangiana HOM05D001174 ORTHO05D001003 1.8e-12 75.5 68 52.9
Duzib093G1066 Durio zibethinus HOM05D001174 ORTHO05D001003 2.4e-12 75.1 65 52.3
Glyma.14G212300 Glycine max HOM05D001174 ORTHO05D001003 2.4e-12 75.1 64 51.6
Nitab4.5_0001438g0110 Nicotiana tabacum HOM05D001174 ORTHO05D001003 2.4e-12 75.1 69 52.2
Nitab4.5_0009898g0040 Nicotiana tabacum HOM05D001174 ORTHO05D001003 2.4e-12 75.1 69 52.2
BcaB05g24156 Brassica carinata HOM05D001174 ORTHO05D001003 3.1e-12 74.7 68 50.0
Haze_14291 Corylus avellana HOM05D001174 ORTHO05D001003 3.1e-12 74.7 68 52.9
Nitab4.5_0001650g0070 Nicotiana tabacum HOM05D001174 ORTHO05D001003 3.1e-12 74.7 66 53.0
ClCG10G001160 Citrullus lanatus HOM05D001174 ORTHO05D001003 4.1e-12 74.3 63 55.6
arahy.Tifrunner.gnm1.ann1.7R2T36 Arachis hypogaea HOM05D001174 ORTHO05D001003 5.3e-12 73.9 67 49.3
arahy.Tifrunner.gnm1.ann1.TSBJ8P Arachis hypogaea HOM05D001174 ORTHO05D001003 5.3e-12 73.9 67 49.3
Nitab4.5_0002257g0040 Nicotiana tabacum HOM05D001174 ORTHO05D001003 5.3e-12 73.9 62 53.2
A02p13500 Brassica napus HOM05D001174 ORTHO05D001003 9.1e-12 73.2 68 50.0
BraA02t06408Z Brassica rapa HOM05D001174 ORTHO05D001003 9.1e-12 73.2 68 50.0
SGA_v2.0_scaffold108G30973 Striga asiatica HOM05D001174 ORTHO05D001003 9.1e-12 73.2 68 48.5
SHI30122 Sapria himalayana HOM05D001174 ORTHO05D001003 1.2e-11 72.8 68 50.0
Sp5g21230 Schrenkiella parvula HOM05D001174 ORTHO05D001003 1.2e-11 72.8 68 48.5
Aqoxy2G00632 Aquilegia oxysepala HOM05D001174 ORTHO05D001003 1.6e-11 72.4 69 49.3
TPR.G11027 Trifolium pratense HOM05D001174 ORTHO05D001003 1.6e-11 72.4 64 46.9
AL2G23810 Arabidopsis lyrata HOM05D001174 ORTHO05D001003 2.0e-11 72.0 68 48.5
BcaC03g14733 Brassica carinata HOM05D001174 ORTHO05D001003 2.0e-11 72.0 68 48.5
BolC2t08313H Brassica oleracea HOM05D001174 ORTHO05D001003 2.0e-11 72.0 68 48.5
Medtr5g077750 Medicago truncatula HOM05D001174 ORTHO05D001003 2.6e-11 71.6 64 43.8
Psat2g046160 Pisum sativum HOM05D001174 ORTHO05D001003 3.5e-11 71.2 64 48.4
CSS0048326 Camellia sinensis var. sinensis HOM05D001174 ORTHO05D001003 5.9e-11 70.5 62 50.0
SalBow2G0162 Salvia bowleyana HOM05D001174 ORTHO05D001003 5.9e-11 70.5 65 50.8
Ciclev10017749m.g Citrus clementina HOM05D001174 ORTHO05D001003 7.7e-11 70.1 64 50.0
PSO063G2555 Papaver somniferum HOM05D001174 ORTHO05D001003 7.7e-11 70.1 67 49.3
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.0e-10 69.7 66 47.0
Peaxi162Scf00124g01724 Petunia axillaris HOM05D001174 ORTHO05D001003 1.0e-10 69.7 72 48.6
Lalb_Chr17g0346001 Lupinus albus HOM05D001174 ORTHO05D001003 2.2e-10 68.6 62 46.8
Atru.chr11.817 Acer truncatum HOM05D001174 ORTHO05D001003 2.9e-10 68.2 64 46.9
Ca_05841_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 2.9e-10 68.2 64 46.9
Nitab4.5_0006574g0070 Nicotiana tabacum HOM05D001174 ORTHO05D001003 2.9e-10 68.2 62 50.0
RcHm_v2.0_Chr3g0450161 Rosa chinensis HOM05D001174 ORTHO05D001003 2.9e-10 68.2 68 47.1
THA.LOC104824122 Tarenaya hassleriana HOM05D001174 ORTHO05D001003 2.9e-10 68.2 64 50.0
Migut.E00500 Erythranthe guttata HOM05D001174 ORTHO05D001003 6.5e-10 67.0 62 50.0
PSO017G0079 Papaver somniferum HOM05D001174 ORTHO05D001003 6.5e-10 67.0 82 41.5
FAN14G1145 Fragaria x ananassa HOM05D001174 ORTHO05D001003 1.1e-09 66.2 68 41.2
FAN14G3328 Fragaria x ananassa HOM05D001174 ORTHO05D001003 1.1e-09 66.2 68 41.2
LjContig00141g0000877 Lotus japonicus HOM05D001174 ORTHO05D001003 1.1e-09 66.2 64 46.9
Gorai.013G106900 Gossypium raimondii HOM05D001174 ORTHO05D001003 1.5e-09 65.9 49 59.2
FAN09G0888 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.9e-09 65.5 67 40.3
PGSC0003DMG400000605 Solanum tuberosum HOM05D001174 ORTHO05D001003 1.9e-09 65.5 65 47.7
CiPaw.03G074800 Carya illinoinensis HOM05D001174 ORTHO05D001003 2.5e-09 65.1 69 46.4
SMO356G0690 Selaginella moellendorffii HOM05D001174 ORTHO05D001003 2.5e-09 65.1 67 47.8
Solyc03g116440.3 Solanum lycopersicum HOM05D001174 ORTHO05D001003 2.5e-09 65.1 65 47.7
Gohir.D03G062000 Gossypium hirsutum HOM05D001174 ORTHO05D001003 3.2e-09 64.7 50 56.0
SGA_v2.0_scaffold23G10157 Striga asiatica HOM05D001174 ORTHO05D001003 3.2e-09 64.7 65 50.8
FAN05G0569 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.2e-09 64.3 68 41.2
Gohir.A02G108901 Gossypium hirsutum HOM05D001174 ORTHO05D001003 4.2e-09 64.3 49 57.1
PGR042G2215 Punica granatum HOM05D001174 ORTHO05D001003 4.2e-09 64.3 60 43.3
CAN.G407.108 Capsicum annuum HOM05D001174 ORTHO05D001003 5.5e-09 63.9 62 46.8
Potri.008G137200 Populus trichocarpa HOM05D001174 ORTHO05D001003 5.5e-09 63.9 65 47.7
Sabra08G0104600 Salix brachista HOM05D001174 ORTHO05D001003 9.4e-09 63.2 65 46.2
Hma1.2p1_1450F.1_g284190 Hydrangea macrophylla HOM05D001174 ORTHO05D001003 1.6e-08 62.4 64 48.4
Lalb_Chr10g0104241 Lupinus albus HOM05D001174 ORTHO05D001003 1.6e-08 62.4 62 43.5
SEGI_30421 Sequoiadendron giganteum HOM05D001174 ORTHO05D001003 1.6e-08 62.4 64 40.6
Rhsim10G0198200 Rhododendron simsii HOM05D001174 ORTHO05D001003 2.1e-08 62.0 68 44.1
SHI04348 Sapria himalayana HOM05D001174 ORTHO05D001003 2.1e-08 62.0 62 43.5
Mapoly0039s0094 Marchantia polymorpha HOM05D001174 ORTHO05D001003 2.7e-08 61.6 64 43.8
Cpa.g.sc2.163 Carica papaya HOM05D001174 ORTHO05D001003 3.6e-08 61.2 62 45.2
CDE05G2775 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 3.6e-08 61.2 65 43.1
Peaxi162Scf00274g00853 Petunia axillaris HOM05D001174 ORTHO05D001003 3.6e-08 61.2 60 45.0
SEGI_11319 Sequoiadendron giganteum HOM05D001174 ORTHO05D001003 2.3e-07 58.5 62 41.9
ATR0021G020 Amborella trichopoda HOM05D001174 ORTHO05D001003 3.0e-07 58.2 64 42.2
ATR0021G049 Amborella trichopoda HOM05D001174 ORTHO05D001003 3.0e-07 58.2 64 42.2
Cpa.g.sc87.36 Carica papaya HOM05D001174 ORTHO05D001003 8.8e-07 56.6 38 60.5
Eucgr.G02081 Eucalyptus grandis HOM05D001174 ORTHO05D001003 1.5e-06 55.8 63 42.9
FAN02G3809 Fragaria x ananassa HOM05D001174 ORTHO05D001003 1.5e-06 55.8 68 33.8
Rhsim10G0198500 Rhododendron simsii HOM05D001174 ORTHO05D001003 2.0e-06 55.5 68 39.7
AagrBONN_evm.TU.Sc2ySwM_362.679 Anthoceros agrestis HOM05D001174 ORTHO05D001003 2.6e-06 55.1 62 45.2
AagrBONN_evm.TU.Sc2ySwM_362.680 Anthoceros agrestis HOM05D001174 ORTHO05D001003 2.6e-06 55.1 65 46.2


User provided reference genes

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