Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 9.7e-214 746.5 367 100.0
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 8.9e-175 617.1 439 75.4
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 9.5e-153 543.9 459 63.4
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 1.1e-151 540.4 438 65.5
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 5.2e-151 538.1 459 61.7
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.3e-149 533.5 449 63.7
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 2.2e-149 532.7 438 64.8
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 6.4e-149 531.2 434 65.4
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 1.1e-148 530.4 438 64.8
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 7.1e-148 527.7 441 63.9
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 1.2e-147 526.9 439 64.2
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 3.5e-147 525.4 440 62.7
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 2.3e-146 522.7 438 63.5
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 4.3e-145 518.5 437 63.4
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 7.3e-145 517.7 440 63.6
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 2.1e-144 516.2 438 62.8
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 6.2e-144 514.6 441 63.5
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 5.2e-143 511.5 441 63.3
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 1.5e-142 510.0 439 61.3
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 1.3e-141 506.9 438 62.3
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 1.3e-141 506.9 440 62.3
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 1.3e-141 506.9 605 49.4
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 4.9e-141 505.0 439 61.7
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 2.4e-140 502.7 466 59.9
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 7.1e-140 501.1 383 68.1
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 2.1e-139 499.6 440 61.6
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 1.0e-138 497.3 437 61.3
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.0e-138 497.3 441 62.6
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 3.0e-138 495.7 416 62.7
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 3.9e-138 495.4 437 60.0
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 6.6e-138 494.6 440 61.1
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 6.6e-138 494.6 440 61.1
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 8.7e-138 494.2 440 58.6
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.1e-137 493.8 384 64.3
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.9e-137 493.0 438 60.0
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 3.6e-136 488.8 440 58.4
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 4.8e-136 488.4 430 61.9
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 4.8e-136 488.4 442 59.0
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 4.8e-136 488.4 415 63.6
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 3.4e-134 482.3 440 59.5
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 7.6e-134 481.1 438 60.7
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 9.9e-134 480.7 555 50.8
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 8.4e-133 477.6 437 59.5
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 1.4e-132 476.9 439 57.6
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 1.9e-132 476.5 440 59.3
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 3.5e-131 472.2 438 58.9
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 3.5e-131 472.2 442 57.5
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 1.0e-130 470.7 470 55.7
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 9.6e-129 464.2 441 58.0
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 2.1e-128 463.0 440 57.0
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 3.7e-128 462.2 389 63.2
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 2.4e-127 459.5 442 55.7
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 2.0e-126 456.4 440 56.1
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 4.2e-124 448.7 384 60.2
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 3.5e-123 445.7 439 54.2
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 3.5e-123 445.7 441 56.0
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 6.7e-122 441.4 438 55.3
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 6.7e-122 441.4 473 53.7
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.5e-121 440.3 442 56.1
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 4.3e-121 438.7 441 53.7
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 5.6e-121 438.3 432 55.8
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 2.8e-120 436.0 498 50.4
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 3.1e-119 432.6 429 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 2.0e-118 429.9 438 52.3
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 4.5e-118 428.7 429 53.8
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 4.6e-115 418.7 344 64.0
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 5.1e-114 415.2 441 52.6
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 5.1e-114 415.2 438 53.9
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 1.5e-113 413.7 441 52.2
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 3.3e-113 412.5 438 52.3
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 3.3e-113 412.5 383 57.7
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 5.7e-113 411.8 364 59.6
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 7.4e-113 411.4 458 52.4
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 2.1e-112 409.8 441 51.5
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 4.1e-111 405.6 441 51.5
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 1.0e-109 401.0 445 51.0
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 1.0e-109 401.0 302 70.5
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 1.7e-109 400.2 445 51.0
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 5.0e-109 398.7 390 56.7
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 6.5e-109 398.3 441 51.0
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 6.5e-109 398.3 451 49.9
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 1.9e-108 396.7 442 51.1
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 2.5e-108 396.4 436 50.0
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 2.1e-107 393.3 444 50.2
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 1.0e-106 391.0 467 49.7
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 4.8e-104 382.1 470 48.3
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 9.1e-103 377.9 437 49.4
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 3.3e-97 359.4 444 46.8
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 2.9e-85 319.7 412 45.4
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 1.2e-78 297.7 431 42.2
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 8.5e-77 291.6 434 41.7
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 3.0e-74 283.1 275 56.0
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 5.0e-69 265.8 172 73.8
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 5.7e-65 252.3 226 58.4
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 5.7e-65 252.3 333 46.5
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 3.0e-53 213.4 270 46.7
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 4.7e-51 206.1 193 60.1
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 4.6e-46 189.5 122 77.0
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 2.1e-43 180.6 164 57.9
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.8e-43 180.3 142 62.7
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 5.2e-42 176.0 343 36.2
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 7.1e-39 165.6 147 57.8
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 7.8e-38 162.2 269 33.1
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 6.6e-37 159.1 116 63.8
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 4.0e-34 149.8 188 43.6
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 1.5e-33 147.9 104 64.4
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.1e-30 137.5 116 58.6
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 4.6e-22 109.8 126 48.4
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 1.6e-19 101.3 91 56.0
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 6.2e-19 99.4 71 67.6
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 2.4e-15 87.4 50 80.0
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 3.9e-13 80.1 155 38.7
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 6.7e-13 79.3 44 72.7
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 4.0e-10 70.1 40 75.0
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.2e-09 68.6 103 42.7
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 4.5e-09 66.6 37 75.7
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 1.1e-07 62.0 131 35.9
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 1.6e-06 58.2 237 23.6
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 3.5e-06 57.0 100 42.0


User provided reference genes

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