Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1187.9 584 100.0
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1186.4 583 100.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 4.1e-283 977.6 584 81.5
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 9.2e-283 976.5 584 81.3
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 3.2e-275 951.4 586 79.2
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 9.2e-275 949.9 586 78.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 3.5e-274 948.0 583 78.0
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 5.6e-272 940.6 587 78.5
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 1.4e-267 926.0 582 76.5
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 3.9e-265 917.9 592 74.8
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 5.1e-265 917.5 590 75.8
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 5.6e-264 914.1 592 75.7
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 9.5e-264 913.3 590 75.9
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 4.4e-261 904.4 583 74.1
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.3e-260 902.9 580 74.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 9.2e-259 896.7 583 74.4
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 2.7e-258 895.2 583 74.3
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 3.0e-257 891.7 583 74.8
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.5e-256 889.4 594 72.7
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.9e-256 889.0 578 74.2
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.9e-256 889.0 583 73.9
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 3.6e-255 884.8 583 73.9
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.4e-254 882.9 586 73.9
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.1e-254 881.7 583 74.1
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 6.8e-254 880.6 584 75.0
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 2.0e-253 879.0 583 74.1
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.3e-252 876.3 586 73.5
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.7e-252 875.9 583 73.2
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 2.2e-252 875.5 588 73.3
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.1e-251 873.2 583 71.4
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.1e-251 873.2 589 72.0
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.6e-250 869.4 585 71.1
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 2.1e-250 869.0 585 71.1
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.7e-249 865.9 586 71.7
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.7e-249 865.9 586 71.3
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.9e-249 864.8 589 70.5
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.9e-248 862.4 585 71.3
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 8.1e-247 857.1 583 72.7
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.1e-246 855.1 583 70.8
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 6.9e-246 854.0 581 70.9
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.5e-245 852.8 588 70.4
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 2.6e-245 852.0 583 70.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 3.4e-245 851.7 581 69.7
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-244 849.7 584 70.7
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.3e-244 849.7 581 71.9
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 3.8e-244 848.2 588 70.1
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.1e-243 846.7 573 70.3
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 2.4e-243 845.5 581 69.7
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 9.3e-243 843.6 584 70.4
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.7e-241 839.3 580 70.5
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 3.9e-241 838.2 586 70.6
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 2.5e-240 835.5 583 69.0
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 3.1e-238 828.6 583 67.6
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.3e-238 827.8 793 57.3
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.0e-237 825.9 588 67.3
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 2.0e-237 825.9 586 68.3
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 5.8e-237 824.3 584 68.0
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 5.8e-237 824.3 587 68.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 2.9e-236 822.0 589 66.2
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 3.8e-236 821.6 591 70.6
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 6.4e-236 820.8 588 70.1
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 3.2e-235 818.5 576 69.1
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 3.2e-235 818.5 592 67.2
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 2.1e-234 815.8 583 66.6
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 2.7e-234 815.5 589 68.4
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 3.5e-234 815.1 583 66.7
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.0e-233 813.5 584 66.6
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.3e-233 813.1 497 78.3
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 8.7e-233 810.4 599 65.6
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.9e-232 809.3 572 68.4
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 3.3e-232 808.5 520 73.8
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 3.7e-231 805.1 588 66.0
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 4.8e-231 804.7 583 65.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 6.2e-231 804.3 588 66.0
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 2.4e-230 802.4 574 66.7
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 3.1e-230 802.0 574 66.7
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 1.2e-229 800.0 588 65.6
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.2e-229 800.0 516 73.8
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.1e-227 793.5 585 65.8
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.1e-226 789.3 583 69.8
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 6.0e-226 787.7 587 64.9
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 2.5e-224 782.3 601 63.1
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 3.7e-223 778.5 596 64.9
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 4.0e-222 775.0 572 66.1
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 2.2e-220 769.2 564 67.2
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.8e-215 752.3 405 89.6
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.7e-210 735.7 595 60.8
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 3.9e-209 731.9 597 60.0
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 2.5e-208 729.2 662 57.4
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 1.3e-207 726.9 495 70.9
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 3.7e-207 725.3 489 71.4
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 4.8e-207 724.9 587 60.6
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 2.8e-199 699.1 453 71.7
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.1e-198 697.2 787 52.0
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 4.7e-194 681.8 487 69.8
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 2.6e-189 666.0 569 60.1
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.2e-181 640.6 588 56.6
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 9.5e-163 577.8 451 65.2
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 2.6e-144 516.5 576 47.4
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.3e-143 514.2 317 76.7
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 2.1e-141 506.9 310 78.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.7e-140 503.8 574 46.3
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 4.3e-139 499.2 369 65.3
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 4.2e-134 482.6 545 44.8
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 6.5e-111 405.6 276 68.8
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 8.5e-87 325.5 272 59.6
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 2.0e-67 261.2 274 51.1
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 3.8e-63 246.9 149 74.5
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.6e-45 188.3 259 43.6
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.5e-43 181.8 124 68.5
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 2.9e-42 177.6 155 60.6
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.3e-39 167.9 258 40.7
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 8.6e-39 166.0 208 44.7
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 2.0e-35 154.8 130 60.0
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 1.3e-34 152.1 89 79.8
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.7e-31 141.7 154 48.7
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 2.3e-31 141.4 103 72.8
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.6e-29 135.2 107 65.4
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-29 133.7 169 40.8
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 4.7e-29 133.7 154 44.2
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.5e-27 128.6 87 70.1
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 2.0e-27 128.3 82 74.4
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.9e-26 124.4 82 73.2
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.9e-26 124.4 98 59.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 4.1e-25 120.6 75 69.3
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 8.6e-23 112.8 109 52.3
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 9.6e-22 109.4 70 78.6
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 4.0e-20 104.0 75 72.0
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 8.9e-20 102.8 109 49.5
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 2.0e-19 101.7 79 59.5
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 2.6e-19 101.3 109 48.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-18 99.0 93 58.1
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.4e-17 95.5 65 69.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.9e-17 95.1 192 36.5
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 5.4e-17 93.6 129 45.0
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 9.3e-17 92.8 55 81.8
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.1e-14 85.9 254 26.4
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 4.3e-14 84.0 70 57.1
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 2.1e-13 81.6 57 66.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 8.1e-13 79.7 57 64.9
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 8.1e-13 79.7 57 64.9
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.1e-12 79.3 625 21.1
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-12 77.8 93 41.9
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 6.9e-12 76.6 48 68.8
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.0e-11 75.1 57 61.4
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 9.9e-11 72.8 49 61.2
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-08 63.9 70 54.3
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.3e-07 62.4 56 55.4
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.7e-07 59.7 33 75.8


User provided reference genes

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