Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1456.0 722 100.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1212.2 720 82.8
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1211.1 720 82.6
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1186.4 583 100.0
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1169.5 722 79.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1166.4 719 78.7
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1164.8 723 79.3
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1145.2 718 77.0
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1140.6 726 77.3
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1138.3 722 76.5
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1129.4 726 76.6
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1125.5 722 76.5
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1118.2 719 75.1
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1113.2 716 75.3
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1111.3 719 75.5
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1109.7 719 75.4
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1106.3 719 75.7
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1105.5 719 75.5
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 0.0e+00 1102.8 719 75.5
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1101.3 721 74.9
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1098.2 719 75.0
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 0.0e+00 1095.1 722 74.7
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1094.7 719 74.8
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1091.6 730 73.7
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 0.0e+00 1090.5 719 73.2
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 0.0e+00 1090.1 724 74.4
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1087.4 725 73.4
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 0.0e+00 1085.1 721 73.1
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 0.0e+00 1084.7 721 73.1
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 0.0e+00 1082.8 722 73.3
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1080.1 719 74.4
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1078.5 725 72.3
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 0.0e+00 1077.0 724 72.8
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 4.9e-312 1074.3 721 72.7
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.0e-311 1072.0 659 79.1
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 9.9e-311 1069.7 724 72.2
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.9e-310 1068.1 709 75.7
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 4.9e-310 1067.4 719 72.2
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.1e-309 1066.2 721 72.0
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.2e-308 1062.8 720 72.6
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 1.6e-308 1062.4 719 71.9
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.7e-308 1061.6 717 71.1
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 3.9e-307 1057.7 720 72.6
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.1e-306 1056.2 717 72.1
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 2.5e-306 1055.0 709 71.5
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 9.5e-306 1053.1 717 72.7
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.2e-305 1052.7 719 71.3
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.6e-305 1052.4 717 70.9
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 9.2e-301 1036.6 735 69.1
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 3.9e-299 1031.2 712 71.2
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 2.5e-298 1028.5 633 78.7
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 3.3e-298 1028.1 722 69.5
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 4.3e-298 1027.7 724 71.7
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 5.6e-298 1027.3 724 71.0
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 7.3e-298 1026.9 719 68.4
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 2.8e-297 1025.0 721 70.0
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 3.6e-297 1024.6 724 68.1
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.7e-297 1024.2 719 73.4
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 8.1e-297 1023.5 727 71.8
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.2e-296 1020.8 987 57.5
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.2e-295 1019.6 656 75.2
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 4.4e-295 1017.7 720 69.0
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 8.4e-294 1013.4 727 67.3
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.1e-293 1013.1 720 67.8
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.9e-293 1012.3 718 70.5
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.2e-293 1011.5 724 69.8
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 5.4e-293 1010.7 719 67.6
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 7.1e-293 1010.4 719 67.6
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 4.6e-292 1007.7 724 67.5
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.6e-289 999.2 724 67.0
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 3.6e-289 998.0 719 66.6
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.1e-288 996.5 720 68.3
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.4e-288 996.1 710 67.5
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.8e-288 995.7 710 67.5
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.2e-287 993.0 735 67.2
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.0e-287 992.3 724 66.4
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.9e-286 988.4 541 89.6
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.9e-285 985.7 723 66.4
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 1.7e-283 979.2 737 64.7
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 5.1e-283 977.6 729 65.7
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 6.9e-280 967.2 700 69.0
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 7.6e-279 963.8 639 74.0
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 2.7e-276 955.3 727 65.5
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 1.8e-275 952.6 719 66.3
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 5.1e-275 951.0 653 71.1
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 6.0e-268 927.5 631 72.1
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.9e-266 922.5 625 72.3
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 5.3e-264 914.4 723 62.7
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 4.5e-263 911.4 589 73.3
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 4.5e-263 911.4 733 61.3
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 3.2e-261 905.2 731 61.6
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.3e-257 893.3 874 54.9
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.1e-256 890.2 981 53.3
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.1e-253 880.2 569 74.0
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 6.5e-246 854.4 724 60.9
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 4.7e-220 768.5 727 57.2
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 5.2e-203 711.8 453 76.6
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 7.5e-194 681.4 487 69.8
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 3.8e-177 625.9 730 46.3
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 7.8e-167 591.7 705 44.0
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 5.3e-163 578.9 363 76.9
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.2e-162 577.8 451 65.2
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 6.7e-158 562.0 652 46.5
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 5.3e-139 499.2 369 65.3
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 8.0e-111 405.6 276 68.8
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 3.1e-99 367.1 225 79.6
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.2e-98 365.2 254 70.5
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.0e-86 325.5 272 59.6
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 3.7e-84 317.0 290 57.9
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.9e-76 290.0 166 88.0
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 2.4e-67 261.2 274 51.1
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 4.7e-63 246.9 149 74.5
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.0e-45 188.3 259 43.6
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.0e-41 176.0 154 60.4
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.8e-39 167.9 258 40.7
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.1e-38 166.0 208 44.7
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 2.5e-35 154.8 130 60.0
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 3.7e-31 141.0 103 72.8
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 2.0e-29 135.2 107 65.4
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.5e-29 134.0 109 58.7
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-29 133.7 169 40.8
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.9e-29 133.7 154 44.2
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.9e-27 128.6 87 70.1
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 2.5e-27 128.3 82 74.4
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.5e-26 124.4 82 73.2
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.5e-26 124.4 98 59.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 5.1e-25 120.6 75 69.3
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 1.1e-22 112.8 109 52.3
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.2e-21 109.4 70 78.6
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 5.0e-20 104.0 75 72.0
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.1e-19 102.8 109 49.5
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 2.5e-19 101.7 79 59.5
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 3.2e-19 101.3 109 48.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.6e-18 99.0 93 58.1
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.8e-17 95.5 65 69.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.8e-17 95.5 192 36.5
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 6.7e-17 93.6 129 45.0
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 1.1e-16 92.8 55 81.8
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.4e-14 85.9 254 26.4
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 5.3e-14 84.0 70 57.1
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 9.1e-14 83.2 98 49.0
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 2.6e-13 81.6 57 66.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.0e-12 79.7 57 64.9
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.0e-12 79.7 57 64.9
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.3e-12 79.3 625 21.1
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-12 77.8 93 41.9
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 8.5e-12 76.6 48 68.8
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.5e-11 75.1 57 61.4
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.2e-11 74.3 70 51.4
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 2.7e-10 71.6 53 64.2
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.4e-09 69.3 48 68.8
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 5.7e-08 63.9 70 54.3
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.7e-07 62.4 56 55.4
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.1e-06 59.7 33 75.8


User provided reference genes

Program Settings