Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 2036.9 1036 100.0
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1843.9 1041 89.8
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1812.3 1038 88.5
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1763.8 1016 88.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1741.5 1017 87.4
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1740.3 1043 85.2
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1734.2 1016 86.6
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1731.1 1043 85.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1728.4 1041 84.7
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1726.1 1042 84.0
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1724.1 1038 85.4
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1719.1 1042 83.6
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1716.4 1039 85.0
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1715.3 1042 84.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1713.7 1076 82.5
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1712.2 1042 83.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1711.0 1046 84.3
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1709.5 1040 83.6
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1702.2 1031 82.9
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1697.9 1055 83.4
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1697.9 1065 82.1
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1697.6 1046 83.5
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1692.2 1043 83.3
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1692.2 1051 82.3
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1691.8 1058 82.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1691.4 1044 83.2
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1690.6 1058 82.8
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1687.9 1033 83.8
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1687.2 1033 83.8
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1681.8 1042 82.6
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1678.7 1037 82.7
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1676.0 1058 82.2
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1674.8 1041 81.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1674.1 1053 82.5
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1672.1 1041 81.4
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1669.4 1045 82.5
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1668.3 1052 82.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1665.6 1045 82.4
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1665.2 1053 81.3
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1662.5 1042 80.6
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1658.3 1078 80.4
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1652.9 1050 81.4
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1652.9 1044 81.1
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1650.6 1039 81.6
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1650.2 1043 80.9
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1648.6 1036 80.8
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1646.7 1043 80.7
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1644.4 1039 81.4
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1634.0 1031 80.9
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1622.4 1037 79.9
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1620.9 1046 80.8
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1620.1 1020 80.7
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1616.3 1059 78.8
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1609.7 1050 78.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1607.0 1047 79.1
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1605.9 1036 78.9
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1605.5 1037 78.6
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1046 78.8
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1601.6 1042 78.9
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1601.6 1051 79.5
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1600.1 1051 79.0
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1598.6 1043 78.4
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1596.3 1046 78.4
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1595.9 1049 79.7
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1592.8 1048 78.2
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1592.8 1016 79.7
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1592.8 1049 78.4
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1592.0 1048 78.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1592.0 1048 77.9
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1591.2 1050 78.1
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1040 79.0
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1041 79.2
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1588.2 1041 79.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1581.6 1051 77.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1581.6 1047 77.6
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1578.9 1049 76.9
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1578.9 1047 77.1
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1577.8 1048 77.3
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1574.3 1047 77.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1052 76.0
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1052 76.0
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1563.5 1047 78.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1563.5 1052 76.6
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1559.7 1045 77.9
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1045 77.8
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1053 75.8
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1151 71.5
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1053 75.7
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1553.5 1049 76.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1553.5 1058 76.3
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1552.0 1048 76.2
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1049 75.9
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1550.0 1048 76.7
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1020 77.1
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1546.2 1048 76.0
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1544.6 1051 75.5
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1539.6 1089 74.8
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1535.8 1018 76.2
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1087 74.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1515.7 1047 75.5
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1470.3 1022 73.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1436.8 931 78.1
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1434.5 1050 72.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1433.7 1044 73.9
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1408.3 951 75.2
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1392.9 1041 70.4
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1357.0 1029 70.2
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1347.4 957 70.3
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1347.0 1008 70.8
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1316.2 1023 67.4
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1287.3 1015 64.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1243.4 819 76.8
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1222.2 624 99.8
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1138.3 1021 58.3
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1122.1 1015 59.5
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1117.4 758 76.5
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 7.1e-312 1073.9 1016 54.9
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.9e-307 1059.3 1027 55.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-300 1035.8 1007 58.6
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.4e-297 1026.5 711 72.7
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.6e-296 1022.3 721 71.4
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.7e-279 965.3 959 58.4
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-275 952.2 1030 52.5
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.0e-268 930.6 619 75.8
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 6.6e-268 927.9 1036 52.2
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-267 925.6 1023 52.6
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.7e-247 860.1 558 78.3
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.6e-242 843.6 479 88.7
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.9e-222 776.9 447 88.4
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-206 723.8 1039 44.7
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.6e-192 677.6 437 78.9
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.0e-191 674.9 1012 42.6
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-177 628.2 488 66.8
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 7.0e-177 625.5 386 82.1
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.8e-176 622.1 481 68.8
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.6e-173 613.2 522 59.8
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.0e-167 595.1 454 68.1
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 1.4e-161 574.7 1040 36.4
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.6e-157 560.1 412 68.2
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 3.5e-144 516.9 504 59.5
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 4.6e-144 516.5 561 54.9
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.0e-143 513.8 373 71.3
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.3e-142 510.0 367 71.7
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.3e-142 510.0 367 71.7
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.8e-139 499.6 372 72.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 3.5e-136 490.3 322 75.5
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 3.2e-129 467.2 661 44.0
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 3.7e-125 453.8 586 45.7
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.9e-122 444.1 1071 31.7
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.8e-116 424.9 275 78.9
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 6.5e-106 389.8 290 69.7
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.1e-104 384.8 279 73.5
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.2e-91 342.4 184 94.6
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.2e-90 338.2 195 86.2
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-88 330.5 512 43.4
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 1.3e-82 312.4 393 49.4
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.1e-81 309.3 516 36.4
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-72 278.9 417 43.9
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-69 268.9 228 65.8
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.2e-63 247.3 221 63.8
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.4e-62 244.2 135 86.7
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.3e-61 240.0 303 49.2
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 2.1e-56 225.3 138 81.9
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 9.2e-52 209.9 128 83.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.3e-50 205.3 165 68.5
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.2e-46 193.0 146 71.2
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 9.2e-44 183.3 191 49.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 2.7e-43 181.8 201 50.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-36 159.1 124 68.5
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 6.6e-34 150.6 172 53.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.5e-33 149.4 251 40.2
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 7.6e-30 137.1 264 36.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 7.6e-30 137.1 91 80.2
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 4.3e-25 121.3 88 65.9
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-16 92.4 67 67.2
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.6e-14 85.5 55 78.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.7e-13 82.8 72 52.8
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 6.0e-11 74.3 49 71.4
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 3.9e-10 71.6 62 56.5
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.1e-09 70.1 107 39.3


User provided reference genes

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