Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.4e-159 565.5 286 100.0
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.9e-71 273.5 294 51.4
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 7.9e-70 268.1 285 51.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.0e-69 267.7 294 52.0
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.0e-69 266.2 294 52.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 5.1e-69 265.4 293 51.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.1e-69 265.4 296 51.0
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 6.7e-69 265.0 294 51.4
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 6.7e-69 265.0 292 51.7
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 6.7e-69 265.0 294 52.4
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 8.7e-69 264.6 293 51.5
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 8.7e-69 264.6 292 49.7
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 8.7e-69 264.6 296 50.7
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.1e-68 264.2 293 51.2
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.1e-68 264.2 294 51.0
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.1e-68 264.2 294 50.7
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.1e-68 264.2 295 50.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.5e-68 263.8 292 51.7
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.9e-68 263.5 294 51.4
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.9e-68 263.5 291 51.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.9e-68 263.5 294 51.4
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.9e-68 263.5 299 49.2
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.5e-68 263.1 293 50.9
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.5e-68 263.1 294 51.4
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.3e-68 262.7 294 50.7
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.3e-68 262.7 294 50.3
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.3e-68 262.3 293 51.5
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 4.3e-68 262.3 294 51.4
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 4.3e-68 262.3 291 51.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.6e-68 261.9 294 50.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 7.4e-68 261.5 295 51.2
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 7.4e-68 261.5 295 51.2
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 7.4e-68 261.5 293 51.5
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 7.4e-68 261.5 294 51.7
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 9.6e-68 261.2 292 50.0
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 9.6e-68 261.2 292 50.0
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.3e-67 260.8 294 50.7
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.6e-67 260.4 289 51.6
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-67 260.4 295 49.2
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.6e-67 260.4 306 48.7
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.6e-67 260.4 290 51.7
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.1e-67 260.0 293 50.2
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.1e-67 260.0 292 49.7
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.1e-67 260.0 294 50.3
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 2.8e-67 259.6 294 51.0
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 2.8e-67 259.6 295 51.5
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.8e-67 259.6 293 50.2
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.8e-67 259.6 292 49.0
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 3.7e-67 259.2 294 50.3
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 4.8e-67 258.8 292 51.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 6.2e-67 258.5 294 51.0
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 8.1e-67 258.1 292 51.0
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.1e-66 257.7 299 48.8
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.4e-66 257.3 291 50.2
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.4e-66 257.3 294 49.3
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-66 256.9 286 51.7
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.4e-66 256.5 294 50.3
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.4e-66 256.5 294 50.7
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 3.1e-66 256.1 292 50.3
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 3.1e-66 256.1 295 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.0e-66 255.8 295 50.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 4.0e-66 255.8 294 50.7
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 4.0e-66 255.8 295 50.2
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 5.3e-66 255.4 293 50.5
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 6.9e-66 255.0 293 48.5
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 9.0e-66 254.6 296 50.0
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 9.0e-66 254.6 294 50.0
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.5e-65 253.8 294 49.0
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.5e-65 253.8 296 50.7
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 1.5e-65 253.8 295 49.5
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.0e-65 253.4 299 48.8
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.0e-65 253.4 295 49.5
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 2.0e-65 253.4 295 49.5
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.0e-65 253.4 295 48.5
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 2.0e-65 253.4 288 50.3
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 5.8e-65 251.9 295 49.8
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 5.8e-65 251.9 295 49.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 7.6e-65 251.5 294 49.7
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 7.6e-65 251.5 298 48.0
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.0e-64 251.1 289 48.8
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.3e-64 250.8 294 49.0
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.7e-64 250.4 294 48.6
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.2e-64 250.0 294 49.0
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.2e-64 250.0 274 50.4
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.9e-64 249.6 286 50.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.9e-64 249.6 294 49.0
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 2.9e-64 249.6 294 50.0
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.8e-64 249.2 285 50.2
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.8e-64 249.2 295 49.8
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 3.8e-64 249.2 294 48.6
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.1e-63 247.7 295 49.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.9e-63 246.9 296 48.3
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-63 245.7 283 50.2
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-63 245.7 283 50.2
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 4.2e-63 245.7 294 47.3
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.2e-63 245.7 294 48.3
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 4.2e-63 245.7 324 45.4
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 7.1e-63 245.0 295 48.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 7.1e-63 245.0 294 48.0
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 7.1e-63 245.0 293 48.1
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 9.3e-63 244.6 297 47.5
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.2e-62 244.2 293 48.5
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.6e-62 243.8 299 48.5
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.6e-62 243.8 294 48.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 4.6e-62 242.3 323 46.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 7.9e-62 241.5 284 48.2
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.0e-61 241.1 222 54.1
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.0e-61 241.1 328 45.1
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.8e-61 240.4 295 48.1
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.9e-61 239.2 312 46.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 6.7e-61 238.4 223 55.6
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.3e-60 236.1 291 49.1
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.3e-60 236.1 314 45.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 5.7e-60 235.3 294 46.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 4.1e-58 229.2 299 43.8
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 4.1e-58 229.2 216 54.2
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.2e-57 227.6 299 44.8
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.2e-57 227.6 328 43.6
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 4.5e-57 225.7 272 47.8
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 5.9e-57 225.3 260 48.5
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.7e-56 223.8 292 44.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 3.6e-54 216.1 193 57.0
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.0e-53 213.0 193 54.4
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 3.9e-53 212.6 266 48.1
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.7e-48 197.2 385 37.7
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.4e-47 194.1 243 45.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 9.4e-47 191.4 202 50.0
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.6e-44 183.3 298 40.9
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.4e-42 177.6 300 40.3
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.3e-42 175.6 254 42.5
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.2e-39 166.0 165 50.3
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 5.5e-39 165.6 213 48.8
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 7.2e-39 165.2 293 39.2
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.2e-35 153.7 296 37.5
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.1e-30 137.1 142 48.6
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 3.6e-30 136.3 194 40.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 7.7e-25 118.6 137 47.4
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 7.7e-25 118.6 137 47.4
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 7.7e-25 118.6 137 47.4
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.1e-23 114.8 162 45.1
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-23 113.6 109 54.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.2e-23 113.2 162 44.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.2e-23 113.2 162 44.4
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.2e-23 113.2 93 60.2
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.4e-20 103.2 83 57.8
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 9.1e-18 95.1 222 31.1
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 8.5e-16 88.6 153 41.2
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 5.5e-15 85.9 80 56.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.2e-11 73.9 239 28.0
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.8e-11 73.6 94 46.8
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 3.7e-11 73.2 59 59.3
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.1e-10 69.7 91 44.0
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 9.2e-10 68.6 66 50.0
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 9.2e-10 68.6 66 50.0
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 9.2e-10 68.6 86 43.0
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 9.2e-10 68.6 58 60.3
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.0e-09 67.4 63 50.8
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.1e-07 61.6 96 38.5


User provided reference genes

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