Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 5.9e-155 550.8 279 100.0
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.1e-71 274.2 261 52.5
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.5e-70 270.4 265 50.2
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 5.0e-69 265.4 265 49.8
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 6.5e-69 265.0 261 50.6
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 8.5e-69 264.6 261 50.6
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 8.5e-69 264.6 265 49.1
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-68 264.2 261 50.2
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.1e-68 264.2 261 50.6
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.1e-68 264.2 260 49.6
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 1.4e-68 263.8 261 51.0
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 1.4e-68 263.8 261 51.0
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.4e-68 263.8 261 49.8
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.9e-68 263.5 261 50.6
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.9e-68 263.5 265 49.4
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.9e-68 263.5 265 49.8
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 2.5e-68 263.1 261 50.2
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.5e-68 263.1 261 50.6
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.5e-68 263.1 261 50.2
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.5e-68 263.1 261 50.2
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 2.5e-68 263.1 261 49.4
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.5e-68 263.1 265 49.4
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 2.5e-68 263.1 279 47.7
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 2.5e-68 263.1 279 48.0
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 2.5e-68 263.1 261 49.4
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.2e-68 262.7 261 49.4
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 3.2e-68 262.7 261 49.8
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 3.2e-68 262.7 265 49.1
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.2e-68 262.7 265 49.1
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.2e-68 262.7 261 50.2
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 3.2e-68 262.7 261 50.6
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.2e-68 262.7 265 49.4
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 4.2e-68 262.3 261 49.4
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 4.2e-68 262.3 261 49.4
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 5.5e-68 261.9 265 49.4
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 5.5e-68 261.9 261 49.8
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 5.5e-68 261.9 260 50.0
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 7.2e-68 261.5 265 49.1
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 7.2e-68 261.5 261 50.6
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 7.2e-68 261.5 261 49.4
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 7.2e-68 261.5 261 49.8
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.4e-68 261.2 261 49.0
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 9.4e-68 261.2 261 49.8
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 1.2e-67 260.8 261 49.4
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.6e-67 260.4 265 49.1
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.6e-67 260.4 265 49.1
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 2.1e-67 260.0 261 49.0
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 2.1e-67 260.0 261 49.4
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.1e-67 260.0 265 48.7
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 2.1e-67 260.0 261 49.4
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 2.7e-67 259.6 261 49.8
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.7e-67 259.6 261 48.7
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.7e-67 259.6 261 49.0
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.7e-67 259.6 261 49.4
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.7e-67 259.6 261 49.4
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.7e-67 259.6 265 49.1
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.7e-67 259.6 261 49.0
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 3.6e-67 259.2 261 49.0
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 3.6e-67 259.2 256 50.0
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 3.6e-67 259.2 265 49.1
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 3.6e-67 259.2 265 47.9
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.6e-67 259.2 269 49.4
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.7e-67 258.8 256 50.0
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 4.7e-67 258.8 265 49.1
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 4.7e-67 258.8 261 49.0
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 4.7e-67 258.8 261 48.7
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 4.7e-67 258.8 261 49.0
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 4.7e-67 258.8 253 51.0
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 6.1e-67 258.5 265 47.9
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 6.1e-67 258.5 265 48.3
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 6.1e-67 258.5 261 49.4
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 7.9e-67 258.1 261 48.7
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 7.9e-67 258.1 265 47.9
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.0e-66 257.7 261 48.7
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.0e-66 257.7 265 47.5
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.0e-66 257.7 261 49.0
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.0e-66 257.7 261 48.7
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.0e-66 257.7 256 50.4
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.0e-66 257.7 265 47.9
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 1.0e-66 257.7 256 50.0
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.4e-66 257.3 265 48.3
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 1.4e-66 257.3 256 49.6
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.8e-66 256.9 265 47.2
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.8e-66 256.9 265 47.9
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 2.3e-66 256.5 265 47.5
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.0e-66 256.1 256 48.8
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 3.0e-66 256.1 261 50.6
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 3.0e-66 256.1 256 49.6
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.0e-66 256.1 256 50.0
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 5.2e-66 255.4 261 48.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 6.7e-66 255.0 256 48.8
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 6.7e-66 255.0 261 48.3
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 8.8e-66 254.6 268 48.9
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 1.1e-65 254.2 261 48.3
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.5e-65 253.8 238 52.9
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 1.5e-65 253.8 261 48.7
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.6e-65 253.1 238 52.9
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 2.6e-65 253.1 261 47.5
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 2.6e-65 253.1 256 48.8
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 7.4e-65 251.5 305 43.6
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 9.7e-65 251.1 252 48.4
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.2e-64 250.0 256 48.4
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.2e-64 250.0 259 47.5
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 2.8e-64 249.6 270 47.8
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.8e-64 249.6 283 46.3
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 6.3e-64 248.4 263 48.3
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 3.1e-63 246.1 269 46.5
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 3.1e-63 246.1 282 45.0
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 4.1e-63 245.7 262 46.9
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 5.3e-63 245.4 266 46.2
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 7.0e-63 245.0 261 48.3
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 2.6e-62 243.0 261 47.5
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 7.7e-62 241.5 265 46.4
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 1.0e-61 241.1 265 46.0
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 1.3e-61 240.7 270 45.9
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 2.2e-61 240.0 265 46.0
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.8e-61 239.2 237 50.2
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.5e-60 237.3 237 49.8
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.9e-60 236.9 256 46.1
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 2.5e-60 236.5 256 46.9
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 4.2e-60 235.7 256 47.3
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 9.4e-60 234.6 257 45.9
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.2e-59 234.2 244 49.2
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.2e-59 234.2 319 41.1
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.6e-59 233.8 268 44.8
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 2.1e-59 233.4 261 46.4
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.1e-59 233.4 263 45.6
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.1e-59 233.4 263 45.6
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 6.1e-59 231.9 243 48.6
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 6.1e-59 231.9 232 48.7
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 8.0e-59 231.5 267 46.1
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.8e-58 230.3 349 38.1
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 6.7e-58 228.4 227 49.3
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 6.7e-58 228.4 298 42.6
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 9.7e-57 224.6 256 45.3
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 5.3e-55 218.8 261 44.1
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.0e-53 214.5 261 43.7
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 8.5e-53 211.5 191 52.4
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 2.5e-52 209.9 255 42.0
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.5e-52 209.9 254 44.1
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 3.4e-49 199.5 203 48.8
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.7e-45 187.2 366 33.6
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 8.6e-45 184.9 178 53.9
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 2.8e-43 179.9 168 54.2
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 2.6e-41 173.3 253 39.1
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-38 163.7 253 37.9
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.9e-36 157.1 231 40.7
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 2.5e-36 156.8 290 33.4
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-35 153.7 158 50.6
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 2.8e-35 153.3 256 35.5
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-29 134.0 196 39.8
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-27 125.9 130 45.4
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-27 125.9 143 42.7
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-20 104.4 175 34.9
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 1.0e-13 81.6 161 29.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 3.1e-10 70.1 74 47.3
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.1e-07 61.6 121 34.7
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 5.4e-07 59.3 68 45.6
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 1.6e-06 57.8 54 48.1


User provided reference genes

Program Settings