Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.3e-180 634.8 292 100.0
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.5e-97 359.0 291 56.4
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 5.2e-93 345.1 288 55.6
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 6.8e-93 344.7 288 55.2
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 8.8e-93 344.4 292 54.5
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.2e-92 344.0 288 54.9
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.0e-92 343.2 288 55.2
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.0e-92 343.2 288 55.2
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.6e-92 342.8 288 54.9
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.6e-92 342.8 288 55.2
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.6e-92 342.8 288 55.2
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 2.6e-92 342.8 291 55.7
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 3.4e-92 342.4 291 55.0
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 5.7e-92 341.7 294 54.4
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 7.5e-92 341.3 288 54.5
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 9.8e-92 340.9 288 54.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-91 340.5 288 54.9
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.3e-91 340.5 288 54.9
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.3e-91 340.5 288 53.8
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.3e-91 340.5 292 54.8
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.7e-91 340.1 292 55.1
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.7e-91 340.1 288 55.6
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.7e-91 340.1 288 54.2
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 2.2e-91 339.7 288 54.5
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 2.2e-91 339.7 288 54.5
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.2e-91 339.7 288 54.5
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 2.2e-91 339.7 288 54.5
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 2.2e-91 339.7 288 55.6
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 2.8e-91 339.3 288 54.5
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 2.8e-91 339.3 288 54.9
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.8e-91 339.3 288 54.9
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.8e-91 339.3 291 54.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.7e-91 339.0 288 54.2
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.7e-91 339.0 288 54.2
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 3.7e-91 339.0 288 54.5
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.7e-91 339.0 288 54.5
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 3.7e-91 339.0 288 54.5
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 4.8e-91 338.6 288 54.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.8e-91 338.6 288 54.5
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 4.8e-91 338.6 288 54.2
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 4.8e-91 338.6 288 54.2
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 4.8e-91 338.6 288 54.2
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 4.8e-91 338.6 288 53.8
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 6.3e-91 338.2 288 54.5
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 6.3e-91 338.2 288 54.2
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 6.3e-91 338.2 288 54.5
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.3e-91 338.2 288 54.2
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 6.3e-91 338.2 288 53.8
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.3e-91 338.2 288 54.5
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 8.3e-91 337.8 288 54.2
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 8.3e-91 337.8 288 53.5
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 8.3e-91 337.8 287 54.4
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 8.3e-91 337.8 291 54.0
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 8.3e-91 337.8 292 54.1
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.3e-91 337.8 288 54.5
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.1e-90 337.4 288 54.2
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.1e-90 337.4 288 53.8
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.4e-90 337.0 288 53.1
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.4e-90 337.0 292 53.8
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.4e-90 337.0 288 53.8
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.4e-90 337.0 288 54.2
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.4e-90 337.0 288 53.8
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.4e-90 337.0 288 53.8
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.4e-90 337.0 291 53.6
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.8e-90 336.7 288 53.8
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.8e-90 336.7 291 54.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.8e-90 336.7 287 54.0
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.8e-90 336.7 288 53.1
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.4e-90 336.3 288 53.5
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.4e-90 336.3 286 54.2
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.4e-90 336.3 287 54.0
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 3.1e-90 335.9 291 53.6
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.1e-90 335.9 292 53.8
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 4.1e-90 335.5 288 54.2
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 4.1e-90 335.5 288 53.8
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 4.1e-90 335.5 288 54.2
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.1e-90 335.5 287 54.0
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 5.4e-90 335.1 293 53.6
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 5.4e-90 335.1 290 53.8
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 5.4e-90 335.1 288 54.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 7.0e-90 334.7 288 53.1
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.1e-90 334.3 288 53.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.2e-89 334.0 291 52.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.2e-89 334.0 288 53.8
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-89 334.0 288 53.8
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-89 334.0 288 53.8
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.2e-89 334.0 289 54.3
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.6e-89 333.6 285 54.0
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.6e-89 333.6 288 53.5
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.6e-89 333.6 288 53.5
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 2.0e-89 333.2 291 53.3
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.0e-89 333.2 287 52.3
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.0e-89 333.2 286 52.4
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.7e-89 332.8 288 53.5
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.7e-89 332.8 288 53.5
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.7e-89 332.8 287 53.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.7e-89 332.8 287 53.0
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.5e-89 332.4 288 53.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 3.5e-89 332.4 290 53.8
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.5e-89 332.4 288 54.9
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.5e-89 332.0 294 52.0
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.3e-88 330.5 291 52.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.9e-88 329.3 296 51.7
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 5.0e-88 328.6 285 53.3
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.5e-87 326.2 316 49.7
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.5e-87 326.2 314 50.3
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 4.2e-87 325.5 288 51.4
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.5e-87 325.1 288 53.1
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.2e-86 323.9 288 51.4
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 3.6e-86 322.4 288 52.8
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.0e-85 320.9 265 57.0
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.0e-85 319.3 265 57.4
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.0e-85 318.9 271 55.0
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 5.2e-85 318.5 348 45.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-84 317.4 273 55.7
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.6e-84 316.2 265 56.2
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.8e-82 310.1 265 55.1
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.4e-82 309.7 268 55.6
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.2e-81 307.4 288 49.7
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.0e-80 304.3 292 51.4
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.4e-77 293.9 290 50.0
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 6.8e-77 291.6 228 57.9
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 3.4e-76 289.3 288 47.9
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 4.9e-75 285.4 441 36.5
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 3.2e-74 282.7 288 47.9
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.6e-68 263.1 228 52.6
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.4e-66 257.3 441 34.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.4e-66 256.5 224 53.1
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.2e-65 254.2 299 43.5
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.6e-65 252.3 307 43.6
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.9e-64 249.2 299 42.8
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.6e-62 243.8 327 40.1
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.6e-62 242.7 291 43.0
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.2e-61 238.8 295 41.7
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 9.8e-60 234.6 288 42.7
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.1e-58 231.1 218 50.0
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.2e-58 228.0 214 52.3
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 3.5e-57 226.1 195 54.9
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 3.3e-55 219.5 288 42.4
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.6e-54 217.2 310 40.3
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 3.6e-54 216.1 253 42.7
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.3e-51 207.6 190 53.2
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.2e-46 188.7 161 55.3
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.3e-40 170.2 151 53.0
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.2e-35 153.7 128 53.1
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 8.7e-32 141.7 132 50.0
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.3e-19 101.3 158 36.1
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.9e-19 99.4 94 50.0
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.5e-15 87.0 142 33.1
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 3.7e-14 83.2 74 58.1
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.9e-07 60.8 34 70.6
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 3.3e-07 60.1 72 41.7
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 5.7e-07 59.3 64 45.3
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.6e-06 57.8 60 46.7


User provided reference genes

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