Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 0.0e+00 1323.9 648 100.0
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 4.9e-128 462.6 636 41.4
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 2.8e-123 446.8 636 39.6
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.2e-86 325.1 666 33.2
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 8.0e-86 322.4 664 32.8
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.8e-82 311.2 632 33.5
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 5.3e-82 309.7 659 32.6
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 4.5e-81 306.6 674 30.7
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.0e-80 305.4 659 32.6
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.0e-80 305.4 509 37.1
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 3.8e-80 303.5 654 31.0
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.1e-79 302.0 656 31.6
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 2.5e-79 300.8 656 31.2
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.5e-79 300.8 679 31.4
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.5e-79 299.7 658 31.6
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 5.5e-79 299.7 652 31.7
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 7.2e-79 299.3 653 30.8
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 9.4e-79 298.9 658 31.6
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 9.4e-79 298.9 650 32.5
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.1e-78 297.7 657 31.4
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.1e-78 297.7 648 31.0
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 3.6e-78 297.0 651 31.0
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 6.1e-78 296.2 667 30.4
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 8.0e-78 295.8 653 30.8
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 8.0e-78 295.8 653 30.8
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 8.0e-78 295.8 661 30.3
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 8.0e-78 295.8 653 32.0
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 8.0e-78 295.8 656 31.1
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 8.0e-78 295.8 654 31.8
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.0e-77 295.4 633 32.1
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.4e-77 295.0 654 31.8
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.4e-77 295.0 657 32.1
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.4e-77 295.0 657 32.1
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.8e-77 294.7 648 31.3
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 1.8e-77 294.7 657 31.4
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.8e-77 294.7 657 31.5
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 3.0e-77 293.9 651 31.2
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 3.0e-77 293.9 648 31.0
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 3.0e-77 293.9 649 31.0
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 3.0e-77 293.9 670 30.7
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.0e-77 293.9 661 30.3
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 4.0e-77 293.5 648 31.2
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 4.0e-77 293.5 648 31.2
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 4.0e-77 293.5 648 31.2
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.2e-77 293.1 644 30.6
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 5.2e-77 293.1 655 30.8
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 5.2e-77 293.1 655 31.3
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 6.8e-77 292.7 701 31.2
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 8.8e-77 292.4 648 31.3
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.2e-76 292.0 660 30.2
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.2e-76 292.0 662 30.4
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.5e-76 291.6 648 31.2
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 1.5e-76 291.6 649 30.8
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.5e-76 291.6 646 31.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 2.6e-76 290.8 656 31.1
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.6e-76 290.8 654 31.0
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 3.4e-76 290.4 654 31.3
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 3.4e-76 290.4 652 30.8
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 4.4e-76 290.0 650 31.5
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 4.4e-76 290.0 660 31.4
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 4.4e-76 290.0 659 32.0
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 5.7e-76 289.7 648 30.7
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 5.7e-76 289.7 657 30.7
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 1.3e-75 288.5 651 30.0
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.3e-75 288.5 656 30.8
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 1.7e-75 288.1 653 31.1
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.2e-75 287.7 666 30.6
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 3.7e-75 287.0 659 31.7
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.7e-75 287.0 653 31.7
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.7e-75 287.0 658 30.5
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 3.7e-75 287.0 655 30.7
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 4.8e-75 286.6 654 31.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 4.8e-75 286.6 659 30.8
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 6.3e-75 286.2 646 31.1
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 8.3e-75 285.8 652 30.8
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 8.3e-75 285.8 655 31.1
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.1e-74 285.4 649 31.0
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 1.1e-74 285.4 660 30.8
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.8e-74 284.6 656 29.9
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 1.8e-74 284.6 661 30.3
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 2.4e-74 284.3 496 35.9
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 4.1e-74 283.5 648 30.4
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.1e-74 283.5 581 32.4
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 4.1e-74 283.5 657 30.3
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 5.4e-74 283.1 572 32.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 5.4e-74 283.1 655 30.7
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 7.0e-74 282.7 648 30.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 7.0e-74 282.7 567 32.8
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 7.0e-74 282.7 641 31.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 9.1e-74 282.3 655 31.1
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.6e-73 281.6 668 30.2
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 3.5e-73 280.4 655 30.4
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 3.5e-73 280.4 499 35.7
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 5.9e-73 279.6 468 37.4
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 1.0e-72 278.9 655 30.5
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 2.3e-72 277.7 690 30.0
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 5.0e-72 276.6 572 31.6
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 8.6e-72 275.8 572 31.6
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 8.6e-72 275.8 662 30.2
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 5.5e-71 273.1 496 34.9
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.2e-70 271.9 635 30.9
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 2.1e-70 271.2 500 33.4
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.8e-70 270.8 500 35.0
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.4e-69 268.5 720 28.8
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 2.3e-69 267.7 500 34.6
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.5e-68 265.0 545 33.2
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.7e-67 261.5 677 28.4
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.7e-67 261.5 646 29.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 2.8e-67 260.8 656 28.2
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 4.1e-66 256.9 712 28.1
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.2e-65 255.4 705 28.5
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.2e-65 255.4 608 31.2
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 7.8e-65 252.7 666 28.5
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.0e-64 252.3 666 29.0
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.0e-64 252.3 488 34.2
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.7e-64 251.5 353 40.8
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 6.6e-64 249.6 557 31.2
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 5.6e-63 246.5 642 29.3
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 7.3e-63 246.1 654 28.6
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 9.5e-63 245.7 640 29.8
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 6.1e-62 243.0 579 29.2
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 4.0e-61 240.4 613 29.9
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 4.0e-61 240.4 655 29.3
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.6e-60 237.7 486 31.5
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.3e-59 235.3 698 28.2
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 2.2e-59 234.6 409 35.7
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 3.7e-59 233.8 453 34.0
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 6.0e-57 226.5 351 38.5
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.0e-56 225.7 510 31.6
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.1e-55 222.2 341 38.1
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 6.8e-53 213.0 592 29.2
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.2e-52 212.2 598 31.6
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 8.3e-51 206.1 345 36.5
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.4e-50 204.5 563 29.0
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.9e-48 197.2 277 39.7
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.2e-46 192.2 591 27.4
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.4e-42 176.8 290 33.4
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-39 169.1 332 35.5
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.2e-38 165.6 466 28.3
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.4e-36 157.5 504 28.4
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 4.9e-35 153.7 387 31.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 4.2e-34 150.6 800 22.5
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.9e-23 115.2 194 36.6
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 3.4e-20 104.4 135 37.0
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.4e-18 98.2 180 30.6
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.2e-17 95.9 338 24.9
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.3e-15 87.8 225 32.4
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 6.2e-14 83.6 193 32.6
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 1.1e-13 82.8 165 38.8
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.7e-11 75.5 122 35.2
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-10 72.8 118 37.3
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.0e-08 66.2 226 23.0
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.8e-06 57.4 51 58.8


User provided reference genes

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