Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 5.3e-248 860.5 420 100.0
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 1.5e-157 560.1 373 74.8
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 3.4e-154 548.9 368 74.2
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 8.4e-153 544.3 384 72.7
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 7.1e-152 541.2 379 72.8
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 2.1e-151 539.7 377 71.6
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 7.8e-151 537.7 377 72.9
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 7.8e-151 537.7 378 72.0
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 3.9e-150 535.4 375 73.3
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 2.5e-149 532.7 378 72.5
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 4.3e-149 531.9 378 72.2
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 4.3e-149 531.9 377 72.7
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 2.1e-148 529.6 378 71.7
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 2.8e-148 529.3 375 70.7
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 2.8e-148 529.3 373 71.8
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 3.6e-148 528.9 373 72.1
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 4.7e-148 528.5 375 70.9
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 6.2e-148 528.1 379 70.2
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 8.1e-148 527.7 382 69.9
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 1.4e-147 526.9 369 71.5
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 1.8e-147 526.6 376 69.9
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 3.1e-147 525.8 388 70.9
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 3.1e-147 525.8 363 73.0
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 3.1e-147 525.8 378 72.0
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 9.0e-147 524.2 370 71.1
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 1.2e-146 523.9 374 71.1
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 1.5e-146 523.5 374 71.9
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 2.0e-146 523.1 375 70.4
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 2.0e-146 523.1 374 71.7
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 2.6e-146 522.7 378 68.8
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 2.6e-146 522.7 372 69.9
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 3.4e-146 522.3 374 71.4
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 4.4e-146 521.9 388 70.4
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 4.4e-146 521.9 379 69.9
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 7.6e-146 521.2 375 70.9
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 9.9e-146 520.8 385 68.6
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 1.3e-145 520.4 366 71.0
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 1.3e-145 520.4 381 68.5
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 1.3e-145 520.4 378 68.3
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 1.3e-145 520.4 376 69.4
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 2.2e-145 519.6 378 68.5
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 2.9e-145 519.2 378 68.8
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 3.8e-145 518.8 377 69.8
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 4.9e-145 518.5 378 70.6
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 4.9e-145 518.5 375 69.9
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 6.4e-145 518.1 365 71.0
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 8.4e-145 517.7 371 69.5
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.1e-144 517.3 371 69.5
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.4e-144 516.9 371 69.5
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 5.4e-144 515.0 370 69.7
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 7.1e-144 514.6 374 67.6
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 9.3e-144 514.2 428 62.4
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 9.3e-144 514.2 371 69.3
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 9.3e-144 514.2 373 69.4
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 2.1e-143 513.1 370 70.0
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 2.1e-143 513.1 373 69.2
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 2.1e-143 513.1 373 69.2
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 2.7e-143 512.7 370 69.2
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 4.6e-143 511.9 373 68.4
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 4.6e-143 511.9 374 68.7
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 6.0e-143 511.5 372 69.6
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 6.0e-143 511.5 377 68.7
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 7.8e-143 511.1 374 70.1
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 1.0e-142 510.8 377 69.0
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 1.7e-142 510.0 449 61.0
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 6.6e-142 508.1 366 69.1
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 1.5e-141 506.9 375 69.6
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 1.9e-141 506.5 376 67.8
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 7.3e-141 504.6 370 69.5
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 7.3e-141 504.6 371 68.2
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 4.8e-140 501.9 370 69.7
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 1.8e-139 500.0 366 68.3
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 1.8e-139 500.0 366 68.3
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 2.4e-139 499.6 371 67.4
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 3.1e-139 499.2 405 65.7
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 5.3e-139 498.4 380 66.3
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 1.2e-138 497.3 371 67.1
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 1.5e-138 496.9 371 67.9
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 2.0e-138 496.5 366 67.8
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 2.0e-138 496.5 377 66.6
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 2.6e-138 496.1 364 70.1
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 3.4e-138 495.7 371 67.7
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 3.4e-138 495.7 366 67.8
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 3.4e-138 495.7 441 61.0
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 4.5e-138 495.4 370 67.0
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 1.7e-137 493.4 373 67.6
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 2.2e-137 493.0 380 65.3
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 8.4e-137 491.1 371 67.7
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 8.4e-137 491.1 365 66.8
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 8.4e-137 491.1 365 66.8
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 1.1e-136 490.7 364 67.9
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 1.4e-136 490.3 365 67.1
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 7.1e-136 488.0 366 66.7
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 7.1e-136 488.0 382 66.2
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 1.6e-135 486.9 378 66.7
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 2.1e-135 486.5 371 66.8
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 2.7e-135 486.1 413 62.5
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 4.6e-135 485.3 387 63.6
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 6.0e-135 485.0 365 67.1
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 1.0e-134 484.2 379 64.6
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 6.7e-134 481.5 380 66.1
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 2.5e-133 479.6 377 64.2
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 2.5e-133 479.6 372 66.7
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 1.6e-132 476.9 365 66.0
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 8.1e-132 474.6 367 64.3
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 2.4e-131 473.0 376 64.6
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 9.9e-130 467.6 376 64.1
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 8.4e-129 464.5 356 66.6
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 1.8e-126 456.8 404 60.4
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 3.0e-126 456.1 381 60.6
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 6.7e-126 454.9 380 60.0
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 5.6e-125 451.8 375 61.3
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 1.6e-124 450.3 376 62.5
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 2.8e-124 449.5 376 62.5
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 2.0e-122 443.4 382 60.2
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 1.3e-121 440.7 372 59.7
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 5.1e-118 428.7 427 55.0
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 6.5e-113 411.8 359 57.7
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 8.5e-113 411.4 360 59.4
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 5.3e-107 392.1 224 82.6
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 5.0e-105 385.6 365 55.1
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 6.7e-102 375.2 193 90.7
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 3.1e-99 366.3 346 56.6
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 1.9e-96 357.1 295 61.0
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 1.5e-93 347.4 356 51.1
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 2.0e-90 337.0 277 62.5
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 2.2e-89 333.6 359 50.1
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 5.4e-75 285.8 220 65.5
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 2.3e-73 280.4 239 62.3
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 3.7e-68 263.1 238 59.2
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 1.6e-58 231.1 137 80.3
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 2.8e-55 220.3 129 76.0
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 9.2e-51 205.3 355 34.4
BNapus_Darmor_BZH_scaffold_38p01550 Brassica napus HOM05D005173 ORTHO05D006214 3.0e-49 200.3 126 79.4
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 1.9e-32 144.4 219 38.4
SGA_v2.0_scaffold23G10070 Striga asiatica HOM05D005173 ORTHO05D006214 4.4e-29 133.3 118 59.3
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 1.3e-25 121.7 354 27.7
ClCG07G005020 Citrullus lanatus HOM05D005173 ORTHO05D006214 9.6e-24 115.5 77 72.7
Hma1.2p1_0440F.1_g153610 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 6.4e-20 102.8 78 64.1
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 5.1e-17 93.2 59 76.3
CSS0040146 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 9.6e-16 89.0 47 76.6
Lsat_1_v5_gn_5_98841 Lactuca sativa HOM05D005173 ORTHO05D006214 6.2e-15 86.3 80 57.5
Haze_27227 Corylus avellana HOM05D000464 ORTHO05D000408 5.8e-13 79.7 203 28.1
Nn2g12540 Nelumbo nucifera HOM05D005173 ORTHO05D006214 2.5e-11 74.3 47 63.8
Sc11g0008440 Simmondsia chinensis HOM05D000464 ORTHO05D000408 4.6e-10 70.1 246 23.6
Phvul.004G067200 Phaseolus vulgaris HOM05D000464 ORTHO05D000408 6.0e-10 69.7 251 23.9
Psat1g081920 Pisum sativum HOM05D000464 ORTHO05D000408 6.0e-10 69.7 209 26.3
Ca_04375_v3 Cicer arietinum L. HOM05D000464 ORTHO05D000408 1.0e-09 68.9 250 24.8
Lj2g0002905 Lotus japonicus HOM05D000464 ORTHO05D000408 1.0e-09 68.9 205 24.9
Lalb_Chr02g0158151 Lupinus albus HOM05D000464 ORTHO05D000408 1.3e-09 68.6 246 23.2
Medtr6g018930 Medicago truncatula HOM05D000464 ORTHO05D000408 1.3e-09 68.6 209 25.8
Glyma.13G044600 Glycine max HOM05D000464 ORTHO05D000408 1.8e-09 68.2 246 24.0
Glyma.19G050600 Glycine max HOM05D000464 ORTHO05D000408 1.8e-09 68.2 250 24.8
THA.LOC104823854 Tarenaya hassleriana HOM05D000464 ORTHO05D000408 3.0e-09 67.4 241 23.2
Cre03.g207041 Chlamydomonas reinhardtii HOM05D000464 ORTHO05D000408 5.1e-09 66.6 164 26.2
Ciclev10012120m.g Citrus clementina HOM05D000464 ORTHO05D000408 5.1e-09 66.6 205 24.9
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 5.1e-09 66.6 88 44.3
MCO15G111 Micromonas commoda HOM05D005173 ORTHO05D006214 1.1e-08 65.5 223 22.9
SalBow5G5150 Salvia bowleyana HOM05D000464 ORTHO05D000408 1.1e-08 65.5 215 24.2
ATR0691G084 Amborella trichopoda HOM05D000464 ORTHO05D000408 1.5e-08 65.1 250 23.6
Mapoly0127s0041 Marchantia polymorpha HOM05D000464 ORTHO05D000408 2.5e-08 64.3 207 25.1
Pp3c11_18640 Physcomitrium patens HOM05D000464 ORTHO05D000408 9.6e-08 62.4 223 24.7
AT1G13610 Arabidopsis thaliana HOM05D000464 ORTHO05D000408 1.6e-07 61.6 173 27.2
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 1.6e-07 61.6 187 29.4
DCAR_004270 Daucus carota HOM05D000464 ORTHO05D000408 3.7e-07 60.5 246 21.5
SEGI_17932 Sequoiadendron giganteum HOM05D005173 ORTHO05D006214 4.8e-07 60.1 38 76.3
VMungo0464G1112 Vigna mungo HOM05D000464 ORTHO05D000408 8.2e-07 59.3 229 22.7
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 1.1e-06 58.9 190 28.9
Carub.0001s3052 Capsella rubella HOM05D000464 ORTHO05D000408 1.4e-06 58.5 221 20.4
Oeu064216.1 Olea europaea HOM05D003117 ORTHO05D003612 1.4e-06 58.5 187 28.3
DCAR_008219 Daucus carota HOM05D000464 ORTHO05D000408 1.8e-06 58.2 203 22.2
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 2.4e-06 57.8 155 29.7
SGA_v2.0_scaffold88G27334 Striga asiatica HOM05D003117 ORTHO05D003612 6.9e-06 56.2 152 28.3


User provided reference genes

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