Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 1.6e-100 369.4 183 100.0
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 6.2e-36 154.8 80 88.8
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.2e-26 124.0 116 62.1
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 6.4e-25 118.2 78 73.1
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.2e-23 114.0 78 70.5
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.1e-21 107.5 78 65.4
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 2.7e-15 86.3 60 66.7
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-14 84.0 60 66.7
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-14 84.0 60 66.7
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-14 84.0 60 66.7
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-14 84.0 60 66.7
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 2.3e-14 83.2 60 63.3
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 3.0e-14 82.8 60 63.3
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 3.0e-14 82.8 60 66.7
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 3.0e-14 82.8 60 65.0
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 3.9e-14 82.4 60 65.0
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 8.7e-14 81.3 60 65.0
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 1.1e-13 80.9 60 65.0
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.9e-13 80.1 60 61.7
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.5e-13 79.7 60 61.7
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 2.5e-13 79.7 60 63.3
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 2.5e-13 79.7 60 61.7
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 3.3e-13 79.3 60 63.3
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 3.3e-13 79.3 60 63.3
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 3.3e-13 79.3 60 61.7
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 4.3e-13 79.0 60 60.0
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 4.3e-13 79.0 60 61.7
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 5.7e-13 78.6 60 61.7
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 5.7e-13 78.6 60 61.7
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 5.7e-13 78.6 60 61.7
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 5.7e-13 78.6 60 63.3
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 7.4e-13 78.2 60 61.7
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.4e-13 78.2 60 63.3
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 7.4e-13 78.2 60 61.7
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 9.7e-13 77.8 60 61.7
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 9.7e-13 77.8 60 61.7
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 9.7e-13 77.8 60 61.7
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 9.7e-13 77.8 60 63.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.3e-12 77.4 60 61.7
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.3e-12 77.4 60 65.0
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.3e-12 77.4 60 58.3
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.3e-12 77.4 60 61.7
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 1.3e-12 77.4 60 56.7
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.6e-12 77.0 60 60.0
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.6e-12 77.0 60 61.7
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.6e-12 77.0 60 61.7
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.6e-12 77.0 60 56.7
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.6e-12 77.0 60 56.7
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.6e-12 77.0 60 60.0
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 2.2e-12 76.6 60 61.7
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.2e-12 76.6 60 60.0
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 2.8e-12 76.3 76 48.7
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 3.7e-12 75.9 60 58.3
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 3.7e-12 75.9 60 56.7
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 4.8e-12 75.5 59 61.0
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 4.8e-12 75.5 60 61.7
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.8e-12 75.5 60 61.7
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 4.8e-12 75.5 62 58.1
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 6.3e-12 75.1 60 61.7
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.3e-12 75.1 60 60.0
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.3e-12 75.1 60 60.0
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.3e-12 75.1 60 60.0
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 6.3e-12 75.1 60 53.3
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 6.3e-12 75.1 60 61.7
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 6.3e-12 75.1 60 60.0
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 8.2e-12 74.7 60 53.3
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 8.2e-12 74.7 60 56.7
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 8.2e-12 74.7 61 54.1
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-11 74.3 60 58.3
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.4e-11 73.9 66 56.1
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.4e-11 73.9 60 56.7
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.4e-11 73.9 60 56.7
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.4e-11 73.9 60 60.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.8e-11 73.6 60 55.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.8e-11 73.6 60 56.7
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.8e-11 73.6 60 60.0
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 1.8e-11 73.6 60 58.3
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.4e-11 73.2 60 56.7
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 2.4e-11 73.2 60 56.7
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 2.4e-11 73.2 60 56.7
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 3.1e-11 72.8 60 55.0
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 3.1e-11 72.8 60 55.0
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.1e-11 72.8 60 56.7
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.1e-11 72.8 60 56.7
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 3.1e-11 72.8 60 56.7
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 3.1e-11 72.8 60 56.7
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 5.3e-11 72.0 60 58.3
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 5.3e-11 72.0 60 58.3
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 6.9e-11 71.6 60 58.3
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 6.9e-11 71.6 60 55.0
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 6.9e-11 71.6 60 58.3
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 6.9e-11 71.6 60 58.3
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 6.9e-11 71.6 60 58.3
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 6.9e-11 71.6 60 58.3
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 9.0e-11 71.2 60 56.7
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 9.0e-11 71.2 60 51.7
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.2e-10 70.9 60 55.0
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.5e-10 70.5 80 42.5
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.0e-10 70.1 60 53.3
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 2.0e-10 70.1 60 55.0
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 2.6e-10 69.7 71 50.7
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.6e-10 69.7 80 42.5
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 4.5e-10 68.9 67 50.7
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.5e-10 68.9 59 55.9
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 4.5e-10 68.9 60 56.7
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 5.9e-10 68.6 59 50.8
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 7.7e-10 68.2 66 48.5
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.3e-09 67.4 64 54.7
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.7e-09 67.0 60 51.7
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 2.9e-09 66.2 61 54.1
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 2.9e-09 66.2 61 54.1
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 5.0e-09 65.5 60 56.7
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 6.5e-09 65.1 60 51.7
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 8.5e-09 64.7 58 55.2
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.4e-08 63.9 71 49.3
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 1.4e-08 63.9 60 50.0
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 1.4e-08 63.9 60 50.0
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.5e-08 63.2 52 57.7
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 5.5e-08 62.0 71 46.5
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.1e-07 60.1 66 40.9
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 4.6e-07 58.9 66 42.4
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.4e-06 57.4 60 48.3
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.0e-06 56.2 57 49.1
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.0e-06 56.2 57 49.1


User provided reference genes

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