Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 6.4e-114 414.1 205 100.0
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 3.5e-88 328.6 173 95.4
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.7e-80 302.4 157 96.2
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.3e-77 293.5 157 90.4
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 9.0e-76 287.3 153 91.5
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 8.4e-74 280.8 170 83.5
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 2.4e-73 279.3 157 86.6
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 3.2e-73 278.9 157 87.3
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 4.2e-73 278.5 159 86.2
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 4.2e-73 278.5 157 85.4
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 5.5e-73 278.1 157 84.7
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 9.3e-73 277.3 157 86.0
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 3.5e-72 275.4 157 84.1
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 3.5e-72 275.4 157 85.4
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 6.0e-72 274.6 157 84.1
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.0e-71 273.9 195 71.3
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.3e-71 273.5 179 76.5
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.8e-71 273.1 157 83.4
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.3e-71 272.7 157 85.4
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 3.0e-71 272.3 158 83.5
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 3.0e-71 272.3 157 83.4
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 3.9e-71 271.9 158 83.5
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 5.1e-71 271.6 170 81.2
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 8.7e-71 270.8 170 82.4
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 8.7e-71 270.8 157 84.7
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.5e-70 270.0 154 83.1
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.5e-70 270.0 154 85.7
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.9e-70 269.6 195 70.8
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.5e-70 269.2 157 83.4
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 3.3e-70 268.9 170 78.8
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 3.3e-70 268.9 197 70.6
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.3e-70 268.5 157 81.5
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.3e-70 268.5 157 81.5
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 5.6e-70 268.1 157 83.4
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 5.6e-70 268.1 157 81.5
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 7.4e-70 267.7 157 83.4
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 7.4e-70 267.7 153 83.0
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 7.4e-70 267.7 196 71.9
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 7.4e-70 267.7 157 81.5
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 9.6e-70 267.3 170 77.6
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 9.6e-70 267.3 157 81.5
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.3e-69 266.9 159 81.8
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.6e-69 266.5 170 77.6
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.6e-69 266.5 157 82.8
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.6e-69 266.5 157 82.8
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 2.1e-69 266.2 157 80.9
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 3.7e-69 265.4 154 81.2
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.7e-69 265.4 157 82.2
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.8e-69 265.0 170 77.6
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.2e-69 264.6 170 77.1
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 6.2e-69 264.6 160 80.6
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 6.2e-69 264.6 170 77.1
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.1e-68 263.8 157 82.8
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 1.1e-68 263.8 195 68.7
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.1e-68 263.8 191 69.6
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.8e-68 263.1 157 79.6
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 1.8e-68 263.1 170 79.4
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 1.8e-68 263.1 170 78.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.8e-68 263.1 160 82.5
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.8e-68 263.1 157 83.4
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.1e-68 262.3 157 83.4
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 4.0e-68 261.9 157 82.2
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 6.9e-68 261.2 157 82.8
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 2.6e-67 259.2 157 79.0
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 2.6e-67 259.2 154 81.8
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 3.4e-67 258.8 154 80.5
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.5e-67 258.5 157 79.6
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 5.8e-67 258.1 157 78.3
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.3e-66 256.9 182 72.5
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.7e-66 256.5 157 78.3
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 2.2e-66 256.1 197 68.0
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.9e-66 255.8 154 83.1
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 3.8e-66 255.4 154 79.2
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 3.8e-66 255.4 199 67.3
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 4.9e-66 255.0 196 66.3
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 4.9e-66 255.0 196 66.3
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 4.9e-66 255.0 176 75.0
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 4.9e-66 255.0 157 79.6
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 8.4e-66 254.2 154 81.2
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 8.4e-66 254.2 157 79.0
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 8.4e-66 254.2 174 74.1
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 8.4e-66 254.2 191 67.0
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 8.4e-66 254.2 158 78.5
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 1.1e-65 253.8 196 65.8
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 1.1e-65 253.8 196 65.8
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.4e-65 253.4 157 79.0
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 4.2e-65 251.9 195 69.2
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.2e-65 251.9 157 77.1
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 7.1e-65 251.1 157 77.7
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.2e-64 250.4 157 76.4
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 2.1e-64 249.6 158 77.2
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-64 249.6 157 76.4
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 2.1e-64 249.6 160 75.6
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 2.7e-64 249.2 158 75.3
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 6.0e-64 248.1 157 77.7
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 7.9e-64 247.7 157 77.7
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.0e-63 247.3 157 74.5
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 2.3e-63 246.1 158 75.9
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.3e-63 246.1 170 71.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 5.1e-63 245.0 158 74.7
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 6.7e-63 244.6 196 64.8
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.9e-62 243.0 159 76.1
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.5e-62 242.7 183 65.6
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 5.7e-62 241.5 193 63.2
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 2.1e-61 239.6 187 67.4
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 1.4e-60 236.9 171 70.8
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.4e-60 236.9 170 69.4
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.1e-60 235.7 168 70.2
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 4.1e-60 235.3 167 70.1
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 5.3e-60 235.0 157 71.3
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.0e-59 233.0 137 81.0
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 8.5e-58 227.6 136 80.1
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 8.5e-58 227.6 157 70.1
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.6e-56 222.2 155 72.3
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 6.7e-55 218.0 143 77.6
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.7e-55 218.0 155 70.3
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.9e-54 216.5 141 74.5
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.8e-52 209.9 154 66.9
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 7.7e-51 204.5 154 64.9
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 7.7e-51 204.5 167 59.9
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 3.8e-50 202.2 142 67.6
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 3.2e-49 199.1 123 78.9
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 9.7e-46 187.6 139 71.9
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 2.6e-43 179.5 167 56.3
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 1.3e-34 150.6 166 47.0
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.2e-34 149.8 87 80.5
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 6.5e-34 148.3 86 80.2
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.5e-33 147.1 100 74.0
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.5e-33 146.4 83 79.5
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 4.2e-33 145.6 140 51.4
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.0e-31 141.0 78 85.9
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 5.2e-31 138.7 87 72.4
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 6.7e-31 138.3 85 77.6
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.3e-29 134.0 128 53.9
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.1e-28 131.0 85 68.2
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.1e-28 131.0 111 61.3
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 5.3e-28 128.6 157 44.6
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 2.7e-27 126.3 71 88.7
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.3e-26 124.0 127 52.8
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.7e-21 107.1 73 75.3
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.2e-14 84.3 64 68.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 7.0e-12 75.1 168 36.3
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 1.3e-10 70.9 45 80.0
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 1.3e-10 70.9 45 80.0
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 1.7e-10 70.5 38 84.2
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 1.1e-09 67.8 48 75.0
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.5e-09 67.4 44 65.9
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 2.5e-09 66.6 43 67.4
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 6.1e-08 62.0 48 68.8
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 6.1e-08 62.0 48 68.8
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 1.0e-07 61.2 48 68.8
A05p14630 Brassica napus HOM05D015232 ORTHO05D015515 6.8e-07 58.5 47 66.0
BolC5t30108H Brassica oleracea HOM05D003829 ORTHO05D028154 2.6e-06 56.6 49 61.2
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 3.4e-06 56.2 38 65.8


User provided reference genes

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